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E-GEOD-12597 GSE12597 transcription profiling by array Homo sapiens

Gene expression profiling of chemokines and chemokine receptors on B-cells in chronically HIV-1 infected patients

Submitted Aug. 26, 2008 ·Released June 25, 2010 ·Updated March 27, 2012
8
Samples
8
Assays
1
Array Platforms
1
References
Description

From the analysis of all genes included in the array a number of individual genes were identified as dys-regulated in HIV-1 infected patients compared to healthy controls. In particular, increased CXCL13 expression in all individual patient samples. Abstract from publication: HIV-1 infection is associated with B-cell abnormalities such as hypergammaglobulinemia, poor immunisation responses and loss of serological memory. To determine whether altered expression of chemokine receptors and their ligands may play a role in B-cell dysfunctions during HIV-1 infection, the expression of CXCR4, CXCR5 and CCR7 receptors and their respective ligands on CD19+ B-cells were examined in HIV-1 infected patients and controls. We report a decreased CXCR5 expression on B-cells from patients (p<0.05), a phenomenon associated with a low CD4 T-cell count (<350 cells/µl). Interestingly, an increased expression of CXCL13, the ligand for CXCR5, was found in peripheral B-cells from HIV-1 infected patients. Moreover upon B-cell activation in vitro, CXCL13 was secreted in culture. In addition, CXCL13 positive B-cells were also found in the lymph nodes of HIV-1 infected patients, but not in control tissue. B-cell migration towards CXCL13, CXCL12 and CCL21, ligands for CXCR5, CXCR4 and CCR7, was also evaluated. In patients with a low CD4 Tcell count, migration towards all ligands was increased. Our findings indicate that altered expression of the chemokine receptor-ligand pair, CXCR5/CXCL13 may participate in the establishment of B-cell dysfunctions during HIV-1 infection. Total RNA was extracted from purified peripheral B-cells from 4 controls and 4 patients.

References
Altered expression of the receptor-ligand pair CXCR5/CXCL13 in B cells during chronic HIV-1 infection.
Cagigi A, Mowafi F, Phuong Dang LV, Tenner-Racz K, Atlas A, Grutzmeier S, Racz P, Chiodi F, Nilsson A
PMID: 18780835
Array Platforms
A-GEOD-3865
SuperArray GEArray Q Series Human Chemokines & Receptors cat. #HS-005.2(8 items)
Sample Attributes
Organism
Homo sapiens
Experiment Info
Accession
E-GEOD-12597
GEO ID
GSE12597
Type
transcription profiling by array
Organism
Homo sapiens
Submitted
Aug. 26, 2008
Released
June 25, 2010
Updated
March 27, 2012
Submitter
Anna Nilsson、 Alberto Cagigi
Analysis Services
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