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E-GEOD-15364 GSE15364 transcription profiling by array Bos taurus

The effect of negative energy balance on bovine blood PMN gene expression

提交 2009年3月24日 ·发布 2010年5月16日 ·更新 2014年5月1日
40
样本数
20
实验数
1
芯片平台
实验描述

Our objectives were to compare gene expression profiles in neutrophils (PMN) during a Streptococcus uberis mastitis challenge between lactating cows subjected to feed restriction to induce negative energy balance (NEB; n = 5) and cows fed ad libitum to maintain positive energy balance (PEB; n = 5). The NEB cows were feed-restricted to 60% of calculated net energy for lactation requirements for 7 d, whereas PEB cows were fed the same diet for ad libitum intake. After 5 d of feed restriction, one rear mammary quarter of each cow was inoculated with 5,000 cfu of Streptococcus uberis (strain O140J). Blood PMN were isolated at 24 h post-inoculation from all cows for RNA extraction and microarray analysis. NEB resulted in 94 differentially expressed genes compared with PEB. Of these, 51 genes were down-regulated, including genes involved with antigen presentation (HLADRA and HLAA), respiratory burst (SOD1), and the pro-inflammatory response (TNFA and IRAK-1). The most affected genes up-regulated by NEB (n = 43) included IL1R2 and IL6, toll-like receptors (TLR2 and TLR4), and THY1. Network analysis by Ingenuity Pathway Analysis ® revealed that TNFA was associated with the expression of numerous differentially expressed genes involved with immune response in NEB cows compared with PEB cows. Energy balance alters PMN expression of several genes involved with immune response, which provides new information on transcriptomic mechanisms associated with post-partal NEB and immune response during early lactation. Briefly, 10 multiparous Holstein cows in PEB and past peak lactation were used for this study. The NEB cows were feed-restricted to 60% of calculated NEL requirements for 7 d, whereas PEB cows were fed the same diet for ad libitum intake. After 5 d of feed restriction, one rear mammary quarter of each cow was inoculated with 5,000 cfu of Streptococcus uberis (strain O140J). Blood PMN were isolated at 24 h post-inoculation from all cows. A 13,257-oligonucleotide (70-mers) array was used for transcript profiling. Cy3- and Cy5 labelled cDNA from PMN and a reference standard were used for hybridizations. All samples were hybridized to duplicate slides with reverse labeling (20 microarrays total).

芯片平台
A-GEOD-8776
UIUC Bos taurus 13.2K 70-mer oligoarray (condensed)(20 例)
样本属性
breed
Holstein
cell type
neutrophil
diet
ad libitum, restricted
Organism
Bos taurus
s. uberis infection
infected
sample type
reference standard
tissue
blood, mixed
实验信息
登记号
E-GEOD-15364
GEO 编号
GSE15364
实验类型
transcription profiling by array
物种
Bos taurus
提交日期
2009年3月24日
发布日期
2010年5月16日
更新日期
2014年5月1日
提交者
Harris A Lewin、 Massimo Bionaz、 Dawn E Morin、 Sandra L Rodriguez-Zas、 Robin E Everts、 Juan J Loor、 Kasey M Moyes、 James K Drackley
分析服务
分析服务

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