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E-GEOD-16909 GSE16909 transcription profiling by array Mus musculus

Gene expression profiling of a mouse model of dilated cardiomyopathy

提交 2009年6月29日 ·发布 2010年4月13日 ·更新 2014年5月2日
24
样本数
24
实验数
1
芯片平台
1
相关文献
实验描述

Analysis of the effects of aging on the development of dilated cardiomyopathy by characterizing both changes in ejection fraction (EF) and gene expression profile in 3 groups of male mice: Control (Cont or WT, n=11) and transgenic (Tg or KO) mice with either high EF (KO-H or Tg-H, n=7) or low EF (KO-L or Tg-L, n=6). We previously produced a line of transgenic mice (Tg) on a mixed genetic background where cardiac-specific overexpression of Cre recombinase reduced expression of the EP4 receptor gene. There were no obvious phenotypes in 10-12-week-old male Tg mice. To determine if a cardiac phenotype developed in aged mice, we assessed cardiac structure and function by echocardiography, histology and gene expression in 23-33-week-old male Tg and littermates (Cont). After echocardiography, hearts were removed to assess hypertrophy (MCSA), fibrosis (ICF) and macrophage infiltration by histological methods and for extraction of total RNA and protein. Cont mice had a normal EF of 80±0.6% (n=70), whereas Tg mice had a lower EF (60±2.7%, n=55, p<0.001) coupled with left ventricular dilatation. The distribution of EFs in the Tg mice was large, ranging from normal to below 30%. MCSA and infiltrating macrophages were not different between groups, but ICF increased by 35% in Tg mice. Cre protein levels in heart lysates did not correlate with either age or EF. In contrast to male Tg mice, female Tg mice had no cardiac dysfunction assessed by echocardiography from 12 to 28 weeks of age. To understand gene expression differences between Cont and Tg mice, whole genome gene expression profiling (Illumina BeadChips) on hearts of 30-32 week old male mice was done. Data indicated that 595 genes were overexpressed in the Tg hearts, 156 of which changed more than 2-fold, including genes involved in remodeling, inflammation, and oxidative stress. 512 genes were downregulated in the Cont hearts, 79 of which changed more than 2-fold, including genes involved with calcium handling, K+ channels, and fatty acid transport and metabolism. In conclusion, Cre overexpression and EP4 knock down in cardiac myocytes in aged male but not female Tg mice are in part associated with increased fibrosis, reduced EF and dilated cardiomyopathy; however, Cre protein itself does not seem to be responsible for the cardiomyopathy. The absence of cardiac dysfunction in female mice suggests a sexual dimorphism in the phenotype. Creation of the cardiac-myocyte specific EP4 KO mouse and littermate controls was described in JY Qian et al, Hypertension 2008: 51(pt 2):560-566. Total RNA extracted from left ventricle of control (Cont or WT, n =11) and cardiac-specific EP4 KO (Tg or KO, n=13) male mice (mean age 31 weeks).

参考文献
芯片平台
A-MEXP-1175
Illumina MouseWG-6 v2.0 Expression BeadChip(24 例)
样本属性
age (weeks)
27.0, 30.0, 30.5, 33.0, 33.5
ef%
13.7, 22.3, 22.8, 27.1, 29.1, 34.0, 45.9, 47.2, 53.2, 53.7, 60.2, 60.8, 71.4, 75.1, 75.2, 75.6, 76.4, 78.3, 81.0, 82.1, 82.9, 83.5, 83.6, 86.1
Organism
Mus musculus
sex
male
strain
mixed genetic background
tissue
left ventricle
实验信息
登记号
E-GEOD-16909
GEO 编号
GSE16909
实验类型
transcription profiling by array
物种
Mus musculus
提交日期
2009年6月29日
发布日期
2010年4月13日
更新日期
2014年5月2日
提交者
James Yang、 Margot C LaPointe
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