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E-GEOD-17431 GSE17431 transcription profiling by array Mus musculus

Inflammatory gene expression in response to sub-lethal ricin exposure in Balb/c mice

·发布 2009年8月19日 ·更新 2014年5月1日
72
样本数
36
实验数
1
芯片平台
1
相关文献
实验描述

The toxin ricin has been shown to cause inflammatory lung damage, leading to pulmonary oedema and, at higher doses, mortality. In order to understand the genetic basis of this inflammatory cascade a custom microarray platform (1509 genes) directed towards immune and inflammatory markers was used to investigate the temporal expression profiles of genes in a Balb/c mouse model of inhalational ricin exposure. To facilitate examination of those genes involved in both inflammatory cascades and wound repair the dose which was investigated was sub-lethal across a 96 hour time course. Histopathology of the lung was mapped across the time course and genetic responses considered in the context of overall lung pathology. 685 genes were found to be statistically significantly different compared to controls, across the time course and these genes have been investigated in the context of their biological function in ricin poisoning. As well as confirming key inflammatory markers associated with ricin intoxication (TNFa and Il1b) several pathways that are altered in expression were identified following pulmonary exposure to ricin. These genes included those involved in cytokine-cytokine signalling cascades (IL1, IL1r, IL1r2, Ccl 4, 6, 10), focal adhesion (Fn1, ICAM1) and tissue remodelling (VEGF, Pim1). Furthermore, the observed alteration in expression of matrix metalloproteinases (MMPs) and their inhibitors (TIMPs) indicates a key role in membrane integrity and cellular adhesion in ricin poisoning. Data captured using this transcriptomic approach could be used to develop a specific approach to the treatment of inhalational ricin exposure. This work was conducted as part of a wider programme of work to compare a number of militarily relevant lung damaging agents, with a view to establishing a rational basis for the identification of more generic medical countermeasures. Four groups of six mice were exposed to ricin and a further groups exposed to vehicle only control (PBS). Following exposure mice were culled at 6 timepoints (1, 4, 7, 24, 48 and 96h). RNA was extracted and run on the custom array.

芯片平台
A-GEOD-8900
Dstl Mouse 1.5K SA52(36 例)
样本属性
agent
Ricin, Sham (PBS)
cell line
Mixture of 11 cell lines
gender
Female
Organism
Mus musculus
strain
Balb/c
time
1h, 24h, 48h, 4h, 7h, 96h
tissue
Lung
实验信息
登记号
E-GEOD-17431
GEO 编号
GSE17431
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2009年8月19日
更新日期
2014年5月1日
提交者
Lucy J Wilkinson、 Gareth D Griffiths、 Jonathan David
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