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E-GEOD-20278 GSE20278 transcription profiling by array Arabidopsis thaliana

The effect of TuMV on translation initiation in Arabidopsis

·发布 2011年3月11日 ·更新 2015年9月10日
12
样本数
12
实验数
1
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实验描述

Arabidopsis ecotype Col-0 expressing RPL18 fused to His & Flag epitopes (RPL18-HF) under 35S control was used to discern the effects of Turnip mosaic virus (TuMV) infection on host translation initiation. Plants were grown in LC-1 soil in 12 hour days and infected by TuMV-GFP or mock-inoculated just prior to sending up bolts. Samples were taken from rosette leaves 10 days after inoculation. Only tissue fluorescing GFP was selected from the virus-infected samples. Similar tissue was sampled from mock-infected leaves. FLAG antibody was used to isolate RPL18-HF. The RNA co-immunoprecipitated with RPL18-HF is fully translation-initiated. This translation-initiated RNA, also referred to as polysomal RNA, was isolated and compared to total RNA under both mock and TuMV-infected states to find TuMV-induced changes in host translation initiation. ****[PLEXdb(

芯片平台
A-AFFY-2
Affymetrix GeneChip Arabidopsis Genome [ATH1-121501](12 例)
样本属性
developmental stage
a vegetative growth
ecotype
Columbia-0 (Col-0)
germplasm
RPL18-HF
growth condition
LC-1 Soil Mix
organism
Arabidopsis thaliana
organism part
rosette leaf
phenotype
All phenotypes to date of this transgenic line constitutively overexpressing RPL18 fused to his and flag epitopes are equivalent to those of wildtype Columbia-0 ecotype.
RNA
polysomal RNA, total RNA
treatment
Plants are approximately 3.5 weeks at time of inoculation. Inoculation lasts 10 days.
实验信息
登记号
E-GEOD-20278
GEO 编号
GSE20278
实验类型
transcription profiling by array
物种
Arabidopsis thaliana
发布日期
2011年3月11日
更新日期
2015年9月10日
提交者
Sudhansu PLEXdb Curator、 Jackson Moeller
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