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E-GEOD-21121 GSE21121 transcription profiling by array Ustilago maydis

Effect of clp1 induction on rbf1-dependent gene regulation

·Released Sept. 17, 2010 ·Updated March 27, 2012
4
Samples
4
Assays
1
Array Platforms
1
References
Description

The clp1 gene is a b-regulated gene that is required for clamp formation during the biotrophic growth phase of U. maydis. Interaction studies demonstrated that Clp1 imnteracts with Rbf1, the central regulator of pathogenciity. To exclude b-dependent effects the experiments were performed in a b-null background to analyze clp1-depndent effects on rbf controlled gene regulation Strains UKH156 (nitrate inducible Rbf1 expression) and UKH164 (arabinose-inducible Clp1 and and nitrate-inducible Rbf1 expression) were grown for 12h in liquid array medium/nitrate/arabinose.

Array Platforms
A-GEOD-3681
MPI UstilagoA(4 items)
Sample Attributes
BioSourceProvider
Kai Heimel, Joerg Kaemper
Organism
Ustilago maydis
strain
UKH156 is a FB1 (a1 b1) derivative in which the b-mating type locus has been replaced by a nitrate-inducible rbf1 gene., UKH164 is a FB1 (a1 b1) derivative in which the b-mating type locus has been replaced by a nitrate-inducible rbf1 gene and an arabinose-inducible clp1 gene was integrated into the ip-locus.., UKH164 is a FB1 (a1 b1) derivative in which the b-mating type locus has been replaced by a nitrate-inducible rbf1 gene and an arabinose-inducible clp1 has been integrated into the ip-locus.
time
12 h in array medium/nitrate/arabinose
Experiment Info
Accession
E-GEOD-21121
GEO ID
GSE21121
Type
transcription profiling by array
Organism
Ustilago maydis
Released
Sept. 17, 2010
Updated
March 27, 2012
Submitter
Kai Heimel、 Joerg Kaemper、 Jörg Thomas Kämper
Analysis Services
Analysis Services

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