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E-GEOD-22362 GSE22362 transcription profiling by array Mus musculus

HSF4 microarray gene expression analysis in the newborn mouse lens

·Released Dec. 1, 2010 ·Updated June 10, 2011
6
Samples
6
Assays
1
Array Platforms
Description

Differential expression of HSF4 in null newborn mouse and wildtype lenses was examined to identify putative downstream targets of HSF4. To examine roles of Brg1 in mouse lens development, a dnBrg1 transgenic construct was expressed using the lens-specific aA-crystallin promoter in postmitotic lens fiber cells. Morphological studies revealed abnormal lens fiber cell differentiation in transgenic lenses resulting in cataract. Electron microscopic studies showed abnormal lens suture formation and incomplete karyolysis (denucleation) of lens fiber cells. To identify genes regulated by Brg1, RNA expression profiling was performed in E15.5 embryonic wild type and dnBrg1 transgenic lenses. In addition, comparisons between differentially expressed genes in dnBrg1 transgenic, Pax6 heterozygous, and Hsf4 homozygous lenses identified multiple genes co-regulated by Brg1, Hsf4 and Pax6. Among them DNase IIb, a key enzyme required for lens fiber cell denucleation, was found downregulated in each of the Pax6, Brg1 and Hsf4 model systems. Lens-specific deletion of Brg1 using conditional gene targeting demonstrated that Brg1 was required for lens fiber cell differentiation and indirectly for retinal development but was not essential for lens lineage formation. Keywords: Differential mRNA Expression Three biological replicate experiments were performed with HSF null and wildtype lenses.

Array Platforms
A-AFFY-36
Affymetrix GeneChip Mouse Genome 430A 2.0 [Mouse430A_2](6 items)
Sample Attributes
developmental stage
newborn
genotype/variation
HSF4 null, wild type
Organism
Mus musculus
strain
ICR
tissue
lens
Experiment Info
Accession
E-GEOD-22362
GEO ID
GSE22362
Type
transcription profiling by array
Organism
Mus musculus
Released
Dec. 1, 2010
Updated
June 10, 2011
Submitter
Akira Nakai、 Jiri Zavadil、 Louise Wolf、 Jiri Zavadil、 Ales Cvekl
Analysis Services
Analysis Services

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