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E-GEOD-23960 GSE23960 ChIP-chip by tiling array Saccharomyces cerevisiae

Budding yeast RNA polymerase II CTD phosphorylation and transcription termination factor localization

·Released Sept. 15, 2010 ·Updated May 1, 2014
24
Samples
12
Assays
1
Array Platforms
1
References
Description

Whole genome analysis of total RNA pol II, Ser2-, Ser5- and Ser7-phosphorylated RNA pol II, in WT and mutants of the C-terminal domain (CTD) kinases Ctk1 and Kin28, and localization of the termination factors Pcf11, Nrd1 and Rat1. ChIP-chip using ligation-mediated PCR-amplified material hybridized to NimbleGen 385K arrays (50mers, median probe spacing 32 bp, cat. No. C4214-00-01).

References
Gene-specific RNA polymerase II phosphorylation and the CTD code.
Kim H, Erickson B, Luo W, Seward D, Graber JH, Pollock DD, Megee PC, Bentley DL
PMID: 20835241
Array Platforms
A-GEOD-4613
NimbleGen Saccharomyces cerevisiae_ChIP whole-genome tiling array(12 items)
Sample Attributes
antibody
none
background
BY4741, S288C, W303
chip antibody
anti-Ser7-PO4 4E12 monoclonal, mouse anti-HA 12CA5 monoclonal, mouse anti-myc 9E10 monoclonal, mouse anti-Ser5-PO4 H14 monoclonal, rabbit anti-GFP, rabbit anti-pan CTD, rabbit anti-Ser2-PO4
chip antibody catalog #
11583816001, MMS-134R, sc-40AC
chip antibody vendor
Covance, Roche, Santa Cruz
Organism
Saccharomyces cerevisiae
strain
DBY1087, DBY311, DBY548, DBY736, DBY786, DBY987, PMY515, PMY518, SHY508, W303
Experiment Info
Accession
E-GEOD-23960
GEO ID
GSE23960
Type
ChIP-chip by tiling array
Organism
Saccharomyces cerevisiae
Released
Sept. 15, 2010
Updated
May 1, 2014
Submitter
David Bentley、 David L. Bentley、 Hyunmin Kim
Analysis Services
Analysis Services

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