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E-GEOD-25256 GSE25256 transcription profiling by array Mus musculus

The neural crest-enriched microRNA miR-452 regulates epithelial-mesenchymal signaling in the first pharyngeal arch

Submitted Nov. 10, 2010 ·Released Nov. 10, 2010 ·Updated May 2, 2014
6
Samples
3
Assays
2
Array Platforms
Description

S23 experiment: We sought to identify the microRNAs (miRNAs) enriched in the neural crest cell (NCC) population from E11.5 mouse embryos. To accomplish this, we utilized a transgenic mouse line harboring Cre-recombinase under the control of the Wnt1 NCC-specific promoter and also carrying the R26R-YFP allele. We sorted YFP+ (NCCs) and YFP- (non-NCCs) from E11.5 Wnt1Cre-R26R mouse embryos via FACS and compared the relative enrichment of miRNAs in the YFP+ population by miRNA microarray. 220 experiment: We sought to identify the microRNAs (miRNAs) enriched in the neural crest cell (NCC) population from E10.5 mouse embryos. To accomplish this, we utilized a transgenic mouse line harboring Cre-recombinase under the control of the Wnt1 NCC-specific promoter and also carrying the R26R-YFP allele. We sorted YFP+ (NCCs) and YFP- (non-NCCs) from E10.5 Wnt1Cre-R26R mouse embryos via FACS and compared the relative enrichment of miRNAs in the YFP+ population by miRNA microarray. 221 experiment: Our research has shown that heterozygous deletion of the miRNA processing enzyme Dicer leads to developmental delay of the thymus in mouse embryos. We sought to identify the microRNAs (miRNAs) affected by the loss of a single copy of Dicer in the neural crest cell (NCC) population from E10.5 mouse embryos. To accomplish this, we utilized a transgenic mouse line harboring a floxed allele of Dicer, Cre-recombinase under the control of the Wnt1 NCC-specific promoter, and also carrying the R26R-YFP allele. We sorted YFP+ (NCCs) cells from E10.5 Dicerfl/+,Wnt1Cre,R26R and Dicer+/+,Wnt1Cre,R26R mouse embryos via FACS and compared the relative expression of miRNAs in the Dicer-heterozygotes compared to Dicer-wildtypes by miRNA microarray. S23 experiment: RNA from YFP+ (NCCs) and YFP- (non-NCCs) cells sorted by FACS from E11.5 Wnt1Cre-R26R mouse embryos was isolated and hybridized to Exiqon miRNA microarrays v10. Cells from five E11.5 embryos were sorted into YFP+ and YFP- populations and pooled. 220 experiment: RNA from YFP+ (NCCs) and YFP- (non-NCCs) cells sorted by FACS from E10.5 Wnt1Cre-R26R mouse embryos was isolated and hybridized to Exiqon miRNA microarrays v10. Cells from ten E10.5 embryos were sorted into YFP+ and YFP- populations and pooled. 221 experiment: RNA from YFP+ (NCCs) cells sorted by FACS from E10.5 Dicerfl/+,Wnt1Cre,R26R and Dicer+/+,Wnt1Cre,R26R mouse embryos was isolated and hybridized to Exiqon miRNA microarrays v10. Cells from ten embryos were sorted into YFP+ populations and pooled for each genotype.

Array Platforms
A-MEXP-1469
Exiqon miRCURY LNA microRNA Array v.10.0 - hsa, mmu & rno, miRBase 12.0 annotation(2 items)
A-GEOD-6512
Exiqon Mus musculus miRNA 0.5K (exiqon_miRCURY_mmu_v7.1)(1 items)
Sample Attributes
developmental state
E10.5, E11.5
gender
Mixed genders
Organism
Mus musculus
strain
Mixed background
tissue extraction
The entire region from just above the eye to below pharyngeal arch 6 was dissected out and subjected to FACS and YFP+ cells were pooled from 10 embryos, The entire region from just above the eye to below pharyngeal arch 6 was dissected out and subjected to FACS and YFP+ cells were pooled from 5 embryos, The entire region from just above the eye to below pharyngeal arch 6 was dissected out and subjected to FACS and YFP- cells were pooled from 10 embryos, The entire region from just above the eye to below pharyngeal arch 6 was dissected out and subjected to FACS and YFP- cells were pooled from 5 embryos
Experiment Info
Accession
E-GEOD-25256
GEO ID
GSE25256
Type
transcription profiling by array
Organism
Mus musculus
Submitted
Nov. 10, 2010
Released
Nov. 10, 2010
Updated
May 2, 2014
Submitter
Neil Sheehy
Analysis Services
Analysis Services

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