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E-GEOD-26052 GSE26052 comparative genomic hybridization by ar… Streptococcus suis

Mutation Mapping of 31 Streptococcus suis strains

·Released Aug. 8, 2012 ·Updated May 2, 2014
62
Samples
31
Assays
1
Array Platforms
1
References
Description

Identification of Genes and Genomic Islands Correlated with High Pathogenicity through Tilling Microarray-Based Comparative Genomics in S. suis. Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. S. suis isolates have been categorized into groups of different levels of pathogenicity, with sequence type (ST) ST1 clonal complex strains having a higher degree of virulence than other STs. However, the genetic basis of the differences in pathogenicity is still poorly understood. In this study, a comprehensive genomic comparison of 31 S. suis strains from different clinical sources with the genome sequence of the high pathogenicity (HP) strain GZ1 was conducted using NimbleGen’s tilling microarray platform. Comparative genomic analysis on the 31 S. suis strains of different serotypes and ST types through tilling arrays.

References
Array Platforms
A-GEOD-11315
ICDC Streptococcus suis GZ1 tilling arrays (MAP01, MAP02)(31 items)
Sample Attributes
Organism
Streptococcus suis
origin
diseased pig, healthy pig, patient, unknown
pathogenicity
highly virulent, unknown, virulent
sample type
reference strain, test strain
sequence type
ST1, ST11, ST25, ST35, ST53, ST54, ST55, ST56, ST6, ST69, ST7, ST71, ST73, ST74, ST75, ST76, ST77, ST78, ST79, ST80, ST81, ST82, ST87, ST91, unknown
serotype
1/2, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 2, 21, 23, 25, 28, 3, 30, 4, 5, 6, 8, 9
site isolated
Canada, China, Denmark, England, France, Germany, Netherland
strain or line
10581, 11538, 11611, 12814, 13730, 14636, 14A, 22083, 2524, 2651, 2726, 31533, 42A, 4417, 4961, 6407, 8830, 89-1591, 89-2479, 89-3576-3, 89-590, 92-1400, 93A, GX1, GZ1, GZ2, LN1, NCTC1046, NT77, P1/7, SC22, SC84
Experiment Info
Accession
E-GEOD-26052
GEO ID
GSE26052
Type
comparative genomic hybridization by array
Organism
Streptococcus suis
Released
Aug. 8, 2012
Updated
May 2, 2014
Submitter
Jianguo Xu、 Xiao Zheng、 Xiao Zheng、 Han Zheng、 Changyun Ye
Analysis Services
Analysis Services

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