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E-GEOD-27964 GSE27964 transcription profiling by array Mus musculus

Age-dependent decline in lung regeneration with loss of clonogenicity and myofibroblastic differentiation of lung fibroblasts

·发布 2011年3月16日
36
样本数
36
实验数
1
芯片平台
实验描述

While aging leads to a reduction in the capacity for regeneration after pneumonectomy (PNX) in most mammals, this biological phenomenon has not been characterized over the lifetime of mice. We measured the age-specific (3, 9, 24 month) effects of PNX on physiology, morphometry, cell proliferation and apoptosis, global gene expression, and lung fibroblast phenotype and clonogenicity in female C57BL6 mice. The data show that only 3 month old mice were fully capable of restoring lung volumes by day 7 and total alveolar surface area. By 9 months, the rate of regeneration was slower (with incomplete regeneration by 21 days), and by 24 months there was no regrowth 21 days post-PNX. The early decline in regeneration rate was not associated with changes in alveolar epithelial cell type II (AECII) proliferation or apoptosis rate. However, significant apoptosis and lack of cell proliferation was evident after PNX in both total cells and AECII cells in 24 mo mice. Analysis of gene expression at several time points (1, 3 and 7 days) post-PNX in 3 versus 9 month mice was consistent with a myofibroblast signature (increased Tnc, Lox1, Col3A1, Eln and Tnfrsf12a) and more alpha smooth muscle actin (αSMA) positive myofibroblasts were present after PNX in 9 month than 3 month mice. Microarray analyses of mRNA expression patterns were performed on lung tissue from 9 month versus 3 month mice, before and after PNX. First, gene expression was compared in whole lungs tissues of young (3 month) vs. middle age (9 month) animals obtained at surgery (left, control lung). Second, the global gene expression responses of 3 vs. 9 mo mice were compared after PNX (1, 3 and 7 days) in the right lung. For each animal in the surgical study, the left (excised) lung lobe was used as a control for the corresponding right lung at the end of the study. This design was intended to increase the statistical power for detecting differences in gene expression by comparing pre- and post-PNX lung tissue from the same biological pools (2 animals/pool, 3 pools per group).

芯片平台
A-MEXP-1175
Illumina MouseWG-6 v2.0 Expression BeadChip(36 例)
样本属性
age
3 months, 9 months
age_group
Aged, Young
biorep
1, 10, 11, 12, 13, 14, 15, 16, 17, 18, 2, 3, 4, 5, 6, 7, 8, 9
condition
Day1AgedControl, Day1AgedPnx, Day1YoungControl, Day1YoungPnx, Day3AgedControl, Day3AgedPnx, Day3YoungControl, Day3YoungPnx, Day7AgedControl, Day7AgedPnx, Day7YoungControl, Day7YoungPnx
control_or_pnx
Control, Pnx
day
1, 3, 7
group
1, 10, 11, 12, 2, 3, 4, 5, 6, 7, 8, 9
Organism
Mus musculus
sample
10L, 10R, 11L, 11R, 12L, 12R, 13L, 13R, 14L, 14R, 15L, 15R, 16L, 16R, 17L, 17R, 18L, 18R, 1L, 1R, 2L, 2R, 3L, 3R, 4L, 4R, 5L, 5R, 6L, 6R, 7L, 7R, 8L, 8R, 9L, 9R
sample_id
5038788014_A, 5038788014_B, 5038788014_C, 5038788014_D, 5038788014_E, 5038788014_F, 5038788018_A, 5038788018_B, 5038788018_C, 5038788018_D, 5038788018_E, 5038788018_F, 5120280007_A, 5120280007_B, 5120280007_C, 5120280007_D, 5120280007_E, 5120280007_F, 5120280008_A, 5120280008_B, 5120280008_C, 5120280008_D, 5120280008_E, 5120280008_F, 5120280018_A, 5120280018_B, 5120280018_C, 5120280018_D, 5120280018_E, 5120280018_F, 5130613014_A, 5130613014_B, 5130613014_C, 5130613014_D, 5130613014_E, 5130613014_F
Sex
female
strain
C57BL6
tissue
left lung, right lung
实验信息
登记号
E-GEOD-27964
GEO 编号
GSE27964
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2011年3月16日
提交者
Julia A Paxson、 Chis Parkin、 Julia Paxson
分析服务
分析服务

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