Home DatasetsExperiment Details
E-GEOD-29208 GSE29208 ChIP-chip by tiling array Mus musculus

TEAD4 occupied genes in differentiated C2C12 myoblasts

·Released Aug. 21, 2011 ·Updated May 2, 2014
12
Samples
6
Assays
2
Array Platforms
1
References
Description

The TEAD (1-4) transcription factors comprise the conserved TEA/ATTS DNA binding domain recognising the MCAT element in the promoters of muscle-specific genes. Despite extensive genetic analysis, the function of TEAD factors in muscle differentiation has proved elusive due to redundancy amongst the family members. Expression of the TEA/ATTS DNA binding domain that acts a dominant negative repressor of TEAD factors in C2C12 myoblasts inhibits their differentiation, while selective shRNA knockdown of TEAD4 results in abnormal differentiation characterised by the formation of shortened myotubes. Chromatin immunoprecipitation coupled to array hybridisation (ChIP-chip) shows that TEAD4 occupies 867 promoters including those of myogenic miRNAs. We show that TEAD factors cooperate with MYOD1 to directly induce Myogenin, CDKN1A and Caveolin 3 expression to promote myoblast differentiation and fusion. RNA-seq identifies a novel set of TEAD4 target genes encoding muscle structural and regulatory proteins and those required for the unfolded protein response. In contrast, TEAD4 represses expression of the growth factor CTGF and Cyclin D1 to promote differentiation. Together these results show that TEAD factor activity is essential for C2C12 cell differentiation and define a novel and nonredundant role for TEAD4 in regulating the unfolded protein response. C2C12 cells were infected with retrotiviral vector expressing Flag-HA-Tagged TEAD4 or with empty control vector and selected in the continouos presence of puromycin. Infected cell populations were then differentiated for 5 days in DMEM medium with 2% horse serum and fixed in 0.4% formaldehyde.

Array Platforms
A-MEXP-1552
Agilent Mouse Promoter Whole Genome ChIP-on-chip Microarray 1 x 244K 014716 G4490A(3 items)
A-MEXP-1553
Agilent Mouse Promoter Whole Genome ChIP-on-chip Microarray 1 x 244K 014717 G4490A(3 items)
Sample Attributes
antibody
anti-Flag
cell line
C2C12 cell derived myotubes
Organism
Mus musculus
sample type
Flag-immunoprecipitated Formaldehyde fixed chromatin, Flag-immunoprecipitated formaldehyde fixed chromatin, Formaldehyde fixed chromatin - input DNA
Experiment Info
Accession
E-GEOD-29208
GEO ID
GSE29208
Type
ChIP-chip by tiling array
Organism
Mus musculus
Released
Aug. 21, 2011
Updated
May 2, 2014
Submitter
Aurore Morlon、 Isabelle Michel、 Gabrielle Mengus、 Irwin Davidson、 Bernard Jost、 Celine Keime、 Tao Ye、 Attaailah Benhaddou
Analysis Services
Analysis Services

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