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E-GEOD-29531 GSE29531, SRP006967 ChIP-seq Homo sapiens

Genetic Framework for GATA Factor Function in Vascular Biology

·发布 2011年8月11日 ·更新 2013年8月22日
5
样本数
5
实验数
1
相关文献
实验描述

Vascular endothelial dysfunction underlies the genesis and progression of numerous diseases. Whereas the GATA transcription factor GATA-2 is expressed in endothelial cells and is implicated in coronary heart disease, it has been studied predominantly as a master regulator of hematopoiesis. As many questions remain unanswered regarding GATA-2 function in the vascular biology realm, we used ChIP-seq and loss-of-function strategies to define the GATA-2-instigated genetic network in human endothelial cells. By contrast to erythroid cells, GATA-2 occupied a unique target gene ensemble, consisting of genes encoding key determinants of endothelial cell identity and inflammation. GATA-2-occupied sites characteristically contained motifs that bind Activator Protein-1 (AP-1), a pivotal regulator of inflammatory genes. GATA-2 frequently occupied the same chromatin sites as c-JUN and c-FOS, heterodimeric components of AP-1. Though all three components were required for maximal AP-1 target gene expression, GATA-2 was not required for AP-1 chromatin occupancy. GATA-2 conferred maximal phosphorylation of chromatin-bound c-JUN at Ser 73, which stimulates AP-1-dependent transactivation, in a chromosomal context-dependent manner. This work establishes a link between a GATA factor and inflammation, mechanistic insights underlying GATA-2-AP-1 cooperativity, and a rigorous genetic framework for understanding GATA-2 function in normal and pathophysiological vascular states. For data usage terms and conditions, please refer to

参考文献
Genetic framework for GATA factor function in vascular biology.
Linnemann AK, O'Geen H, Keles S, Farnham PJ, Bresnick EH
PMID: 21808000
样本属性
cell-type
umbilical vein endothelial cell
organism
Homo sapiens
passage
01/22/2010, 03/05/2010, 04/19/2010, 07/06/2010
实验信息
登记号
E-GEOD-29531
GEO 编号
GSE29531, SRP006967
实验类型
ChIP-seq
物种
Homo sapiens
发布日期
2011年8月11日
更新日期
2013年8月22日
提交者
Philip Cayting、 Henriette O'Geen、 Peggy J Farnham、 Sunduz Keles、 Emery H Bresnick、 Amelia K Linnemann
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分析服务

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