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E-GEOD-29726 GSE29726 transcription profiling by array Mus musculus

The overexpression of Pax6 affects mesenchymal to epithelial transition (MET) pathway during iPS induction in NPC

·Released June 7, 2011 ·Updated June 13, 2011
2
Samples
2
Assays
1
Array Platforms
Description

We performed a microarray analysis to compare N31EGFP and N31Pax6 transcriptional profiles 24 h after iPS induction. Among 603 genes whose levels changed greater than two-fold (295 lower, 308 higher), we noticed a 10-fold decrease in the Cdh1 signal in N31Pax6, which was confirmed by reverse transcription-mediated quantitative polymerase chain reaction (RT-QPCR). iPS induction is known to require activation of the mesenchymal to epithelial transition (MET) pathway, which involves Cdh1 upregulation. In fact, Twist1 expression, repression of which is required for MET pathway activation was higher in N31Pax6. Dox-inducible iPS-NPC, N31, was established from the primary iPSC induced from NSEB5-2C by introducing dox-inducible Oct3/4, Sox2, Klf4 and c-Myc. EGFP or Pax6 were overexpressed in N31 by transfecting CAG-EGFP-IP or CAG-Pax6-IP by Tol2 transposon. Gene expression was measured at 24 hours after exposure to doxycycline, when apparent morphological change was observed only in N31EGFP.

Array Platforms
A-MEXP-724
Agilent Whole Mouse Genome Microarray 4x44K 014868 G4122F (annotation from 02.2007)(2 items)
Sample Attributes
cell type
Neural progenitor cells
Organism
Mus musculus
overexpressed tf
EGFP, Pax6
strain
129/Ola
Experiment Info
Accession
E-GEOD-29726
GEO ID
GSE29726
Type
transcription profiling by array
Organism
Mus musculus
Released
June 7, 2011
Updated
June 13, 2011
Submitter
Shinji Masui、 Takafusa Hikichi
Analysis Services
Analysis Services

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