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E-GEOD-29744 GSE29744 transcription profiling by array Mus musculus

Translational control in early adipogenesis

·发布 2012年3月28日 ·更新 2012年6月26日
12
样本数
12
实验数
1
芯片平台
1
相关文献
实验描述

In obesity, adipose tissue expands by increasing the volume of existing adipocytes (hypertrophy), increasing the number of small adipocytes (hyperplasia) or both. Much is known about transcriptional control during adipogenesis, including early events. However, translational control plays a pivotal role in many dynamic processes and we presume that it is also important for the control of adipogenesis, especially in the first hours after hormonal induction. By use of ribosome profiling we identified 43 genes that are up-regulated and 2 genes that are down-regulated during the first six hours of adipogenesis in 3T3-L1 cells. Interestingly, we found Ghrelin to be down-regulated. Up-regulated genes comprise factors that are nucleic acid binding (Cdkn1c, eIF4b, Hsf1, Irf6, Myc, Plekhn1, Polr2a, Rpl18, Rpl27a, Rpl6, Rpl7a, Rps18, Rpsa, Sema3g, Tbc1d22a, Tsc22d3), form part of ribosomes (L6, L7a, L18, L27a, Sa, S18, S15a pseudogene), act on the regulation of translation (eIF4b) or transcription (Hsf1, Irf6, Myc, Tsc22d3). Others act as chaperones (Bag3, Hspa8/Hsc70, Hsp90ab1) or in other metabolic or signals transducing processes. We conclude that a moderate reorganisation of the functionality of the ribosomal machinery is a very important step for the growth and expression control at the beginning of adipogenesis. 12 samples: 4 (0h, non-polysomal fraction; 0h, polysomal fraction; 6h, non-polysomal fraction; 6h, polysomal fraction) x3 replicates

参考文献
Novel polysome messages and changes in translational activity appear after induction of adipogenesis in 3T3-L1 cells.
Fromm-Dornieden C, von der Heyde S, Lytovchenko O, Salinas-Riester G, Brenig B, Beissbarth T, Baumgartner BG
PMID: 22436005
芯片平台
A-MEXP-724
Agilent Whole Mouse Genome Microarray 4x44K 014868 G4122F (annotation from 02.2007)(12 例)
样本属性
cell line
3T3-L1
fraction
non-polysomal, polysomal
Organism
Mus musculus
实验信息
登记号
E-GEOD-29744
GEO 编号
GSE29744
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2012年3月28日
更新日期
2012年6月26日
提交者
Carolin Fromm-Dornieden、 Bernhard G Baumgartner、 Olexandr Lytovchenko、 Tim Beissbarth、 Silvia von der Heyde、 Silvia von der Heyde、 Lennart Opitz、 Bertram Brenig
分析服务
分析服务

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