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E-GEOD-30028 GSE30028 transcription profiling by array Mus musculus

Expression data from control and Pbx1-null CMPs and GMPs

·Released March 31, 2013 ·Updated June 2, 2014
19
Samples
19
Assays
1
Array Platforms
Description

The capacity of the hematopoietic system to promptly respond to peripheral demands relies on adequate pools of progenitors able to transiently proliferate and differentiate in a regulated manner. However, little is known about factors that may restrain progenitor maturation to maintain their reservoirs. In addition to a profound defect in hematopoietic stem cell (HSC) self-renewal, conditional knockout mice for the Pbx1 proto-oncogene have a significant reduction in lineage-restricted progenitors, including common myeloid progenitors (CMPs) and, to a lesser extent, granulocyte-monocyte progenitors (GMPs). Through analysis of purified progenitor proliferation, differentiation capacity and transcriptional profiling, we demonstrate that in the absence of Pbx1 the CMP pool is reduced due to aberrantly rapid myeloid maturation, associated with decreased expression of Meis1 and its targets including Flt3. BM cells were obtained from multiple bones of individual three to five week old Tie2Cre+.Pbx1-/f or Tie2Cre+.Pbx1+/f control mice (4-5 biological replicates/group). CMPs and GMPs were sorted by flow cytometry according to the following markers: Lin-/c-Kit+/Sca-/CD34+/CD16/32int, and Lin-/c-Kit+/Sca-/CD34+/CD16/32high, respectively, prior to RNA extraction.

Array Platforms
A-AFFY-45
Affymetrix GeneChip Mouse Genome 430 2.0 [Mouse430_2](19 items)
Sample Attributes
age
3 weeks old, 5 weeks old
genotype
Tie2Cre+;Pbx1+/floxed, Tie2Cre+;Pbx1-/floxed
Organism
Mus musculus
organism part
bone marrow
Experiment Info
Accession
E-GEOD-30028
GEO ID
GSE30028
Type
transcription profiling by array
Organism
Mus musculus
Released
March 31, 2013
Updated
June 2, 2014
Submitter
Chenwei Lin、 Francesca Ficara、 Francesca Ficara
Analysis Services
Analysis Services

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