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E-GEOD-30562 GSE30562 transcription profiling by array Homo sapiens, Mus musculus

A Central Role for RAF-MEK-ERK Signaling in the Genesis and Maintenance of Pancreatic Ductal Adenocarcinoma

·发布 2012年7月9日 ·更新 2012年7月17日
34
样本数
34
实验数
2
芯片平台
实验描述

Although KRAS mutation is a hallmark of pancreatic ductal adenocarcinoma (PDA), mutated KRAS remains an intractable pharmacological target. Consequently, an understanding of the RAS effector pathway(s) required for PDA maintenance is critical for improved strategies to treat this disease. Here we demonstrate that expression of BRAFV600E, but not PIK3CAH1047R, in the mouse pancreas led to PanIn lesions. Moreover, concomitant expression of BRAFV600E and TP53R270H resulted in lethal PDA. A large panel of PDA cell line panel was deployed to derive genomic classifiers of MEK inhibitor sensitivity. This classifier correctly predicted survival benefit in two novel in vivo syngeneic, orthotopic models of PDA. Consequently, we conclude that RAF→MEK→ERK signaling is central to the initiation, progression and maintenance of PDA and propose predictive biomarkers of response to MEK inhibition. These data further emphasize the value of leveraging multiple experimental systems to prioritize pathways for intervention in human PDA. RNA was extracted from human PDA cell line samples and hybridized on Affymetrix U133 plus 2.0 microarrays. The CEL files were processed using R based Bioconductor and normalized values were obtained using RMA. RNA was extracted from mouse PDA cell lines and hybridized on Affymetrix Mouse 430a 2.0 microarrays. The CEL files were processed using R based Bioconductor and normalized values were obtained using RMA.

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](32 例)
A-AFFY-36
Affymetrix GeneChip Mouse Genome 430A 2.0 [Mouse430A_2](2 例)
样本属性
cell line
AsPC1, BxPC3, Capan1, Capan2, CFPac1, COLO357, Dan_G, HCG25, HPAC, HPAFII, Hs766T, HupT3, HuPT4, MiaPaca2, MPanc96, Panc 10.05, Panc 2.03, Panc 2.13, Panc 3.27, Panc 5.04, Panc 6.03, Panc 8.13, Panc1, pancreatic ductal adenocarcinoma cell line derived from p48-cre, kras, Ink4a/Arf mice, pancreatic ductal adenocarcinoma cell line derived from p48-cre, kras, p53 fl/wt mice, PL45, Su8686, Suit2, SW1990, T3M4, Tu8902, Tu8988S, Tu8988T, YAPC
Organism
Homo sapiens, Mus musculus
实验信息
登记号
E-GEOD-30562
GEO 编号
GSE30562
实验类型
transcription profiling by array
物种
Homo sapiens, Mus musculus
发布日期
2012年7月9日
更新日期
2012年7月17日
提交者
David Haussler、 Joe W Gray、 Christopher W Szeto、 Jingchun Zhu、 Martin McMahon、 Eric A Collisson
分析服务
分析服务

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