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E-GEOD-31163 GSE31163 transcription profiling by array Homo sapiens

Human induced pluripotent stem cells derived from a sporadic Alzheimer's disease patient

·Released Dec. 31, 2015 ·Updated Jan. 2, 2016
8
Samples
8
Assays
1
Array Platforms
Description

Induced pluripotent stem cell (iPSC) disease models have been generated for a number of diseases, and some have shown their potential utilization for pathological and drug toxicological evaluations. We have generated two hiPSC clones from a non-familial Alzheimer’s patient (AD-iPSCs), which expressed typical undifferentiated markers and fulfilled standard pluripotency assays. Genome-wide microarray analysis revealed that AD-iPSCs are highly similar to control hiPSCs and hESCs, albeit with some noticeable differences in several genes: DNAJC15, GRPR, NAIP and SNORD116-18. Several other biomarkers were differentially expressed in AD-iPSC clones, which were implicated in memory impairment and AD. Furthermore, well characterized familial AD-associated genes (APP, PSEN1, PSEN2) and non-familial (A2M, APOE, GAP43, MAOA, MPO, PLAT, PLAU, SORL1, SNCA) exhibited different expression patterns but were largely reset upon reprogramming into a pluripotent state. Overall, hiPSCs can be good candidates for AD modeling and may represent an in vitro alternative to studying disease mechanisms and drug discovery/toxicology studies. Fibroblasts and two hiPSC clones from a non-familial Alzheimer’s patient (AD-iPSCs) were analyzed. For each cell sample, 2-3 biological replicates were obtained.

Array Platforms
A-AFFY-141
Affymetrix GeneChip Human Gene 1.0 ST Array [HuGene-1_0-st-v1](8 items)
Sample Attributes
cell type
fibroblast, human induced pluripotent stem cell (hiPSC)
clone
1, 7
culture type
feeder-free
disease state of patient
non-familial Alzheimer's disease
organism
Homo sapiens
Experiment Info
Accession
E-GEOD-31163
GEO ID
GSE31163
Type
transcription profiling by array
Organism
Homo sapiens
Released
Dec. 31, 2015
Updated
Jan. 2, 2016
Submitter
Henry Chung、 Ruby C Lin、 Kuldip S Sidhu、 Henry C Chung
Analysis Services
Analysis Services

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