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E-GEOD-32309 GSE32309 transcription profiling by array Mus musculus

Sustained axon regeneration induced by a synergy of PTEN and SOCS3 deletion

·发布 2011年10月27日 ·更新 2011年11月14日
12
样本数
12
实验数
1
芯片平台
实验描述

A formidable challenge in neural repair in the adult central nervous system (CNS) is the long distances that regenerating axons often need to travel in order to reconnect with their targets. Thus, a sustained capacity for axon regeneration is critical for achieving functional restoration. Although deletion of either Phosphatase and tensin homolog (PTEN), a negative regulator of mammalian target of rapamycin (mTOR), or suppressor of cytokine signaling 3 (SOCS3), a negative regulator of Janus kinase/signal transducers and activators of transcription (JAK/STAT) pathway, in adult retinal ganglion cells (RGCs) individually promoted significant optic nerve regeneration, such regrowth tapered off around two weeks after the crush injury. Remarkably, we now find that simultaneous deletion of both PTEN and SOCS3 enable robust and sustained axon regeneration. We further show that PTEN and SOCS3 regulate two independent pathways that act synergistically to promote enhanced axon regeneration. Gene expression analyses suggest that double deletion not only result in the induction of many growth-related genes, but also allow RGCs to maintain the expression of a repertoire of genes at the physiological level after injury. Our results reveal concurrent activation of mTOR and STAT3 pathways as a key for sustaining long-distance axon regeneration in adult CNS, a crucial step toward functional recovery. RNAs were extracted from FACS sorted YFP positive mouse retinal cells, and gene-profiled using affymetrix 1.0 ST expression arrays. Three hybridizations were performed for each group (Wild type after crush, PTEN Knockout+crush, SOCS3 Knockout+crush, and PTEN/SOCS3 double knockout+crush) with RNA samples collected from three independent FACS purifications. Data were analyzed using dChIP and SAM.

芯片平台
A-AFFY-130
Affymetrix GeneChip Mouse Gene 1.0 ST Array [MoGene-1_0-st-v1](12 例)
样本属性
cell type
retinal neuron
genotype/variation
Pten-KO, Pten/Socs3 double KO, Socs3-KO, Wild type
Organism
Mus musculus
protocol
left optic nerve was exposed intraorbitally and crushed ~1 mm behind optic disc
strain
C57BL6/J
实验信息
登记号
E-GEOD-32309
GEO 编号
GSE32309
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2011年10月27日
更新日期
2011年11月14日
提交者
Fang Sun、 Guoping Feng、 Gang Chen、 Kevin K Park、 Bruce A Yankner、 Tao Lu、 Cecil Yeung、 Tao Lu、 Dongqing Wang、 Kang Zhang、 Stephane Belin、 Zhigang He
分析服务
分析服务

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