Deep Sequence Analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations

·发布 2012年6月7日 ·更新 2012年11月6日

样本数

实验数

相关文献

实验描述

In this manuscript, we have used RNA-Sequencing experiment to obtain and integrate a variety of genomic features in order to identify signaling pathways that are associated to mutant KRAS lung tumors. 8 lung adenocarcinomas with mutant KRAS in lung tumors and 8 lung adenocarcarcinomas without KRAS mutation of which one sample is ran twice for QC purposes.

参考文献

Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations.

Kalari KR, Rossell D, Necela BM, Asmann YW, Nair A, Baheti S, Kachergus JM, Younkin CS, Baker T, Carr JM, Tang X, Walsh MP, Chai HS, Sun Z, Hart SN, Leontovich AA, Hossain A, Kocher JP, Perez EA, Reisman DN, Fields AP, Thompson EA

PMID: 22655260

样本属性

cell type

Lung adenocarcinoma

kras status

KRAS mutant (v), KRAS mutant ©, KRAS wildtype

Organism

Homo sapiens

passages

ATCC low passage

实验信息

登记号

E-GEOD-34914

GEO 编号

GSE34914, SRP010166

实验类型

RNA-seq of coding RNA

物种

Homo sapiens

发布日期

2012年6月7日

更新日期

2012年11月6日

提交者

Jean-Pierre Kocher、 Curtis S Younkin、 Micheal P Walsh、 Brian M Necela、 Krishna R Kalari、 Asif Hossain、 Saurabh Baheti、 Jennifer M Carr、 E A Thompson、 High-Seng Chai、 Asha Nair、 Tiffany R Baker、 Alexey A Leontovich、 Jennifer M Kachergus、 Edith A Perez、 Steven N Hart、 Alan P Fields、 Zhifu Sun、 David Rossell、 Xiaojia Tang、 David N Reisman、 Yan W Asmann

外部链接

ArrayExpress 原始页 NCBI GEO：GSE34914, SRP010166

分析服务

Deep Sequence Analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations

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