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E-GEOD-35796 GSE35796 transcription profiling by array Ursus americanus

Preservation of bone mass and structure in hibernating black bears (Ursus americanus) through elevated expression of anabolic genes

·发布 2012年2月15日 ·更新 2014年5月2日
24
样本数
24
实验数
2
芯片平台
实验描述

Physical inactivity reduces mechanical load on the skeleton, which leads to losses of bone mass and strength in non hibernating mammalian species. Although bears are largely inactive during hibernation, they show no loss in bone mass and strength. To obtain insight into molecular mechanisms preventing disuse bone loss, we conducted a large-scale screen of transcriptional changes in trabecular bone comparing winter hibernating and summer non hibernating black bears using a custom 12,800 probe cDNA microarray. A total of 241 genes were differentially expressed (P < 0.01 and fold change > 0.5) in the ilium bone of bears between winter and summer. The Gene Ontology and Gene Set Enrichment analysis showed an elevated proportion in hibernating bears of over-expressed genes in six functional sets of genes involved in anabolic processes of tissue morphogenesis and development including skeletal development, cartilage development and bone biosynthesis. Apoptosis genes demonstrated a tendency for down regulation during hibernation. No coordinated directional changes were detected for genes involved in bone resorption, although some genes responsible for osteoclast formation and differentiation (Ostf1, Rab9a, c- Fos) were significantly under expressed in bone of hibernating bears. Elevated expression of multiple anabolic genes without induction of bone resorption genes, and the down regulation of apoptosis related genes, likely contribute to the adaptive mechanism that preserves bone mass and structure through prolonged periods of immobility during hibernation. Black bears sampled during winter hibernation were compared with the animals sampled during summer. Bone RNA were hybridized on a custom 12,800 cDNA probe nylon membrane microarray platform . Six hibernating and six summer active bears were studied in this experiments.

芯片平台
A-GEOD-13263
Wistar Institute Ursus americanus 9.6 k BA02(12 例)
A-GEOD-8249
Wistar Institute Ursus americanus 9.6 k BA01(12 例)
样本属性
gender
male
Organism
Ursus americanus
tissue type
bone
实验信息
登记号
E-GEOD-35796
GEO 编号
GSE35796
实验类型
transcription profiling by array
物种
Ursus americanus
发布日期
2012年2月15日
更新日期
2014年5月2日
提交者
Jun Yan、 Michael K Showe、 Vadim Fedorov、 Brian M Barnes、 Celia Chang、 Haifang Wang、 Anna V Goropashnaya、 Oivind Tøien、 Nathan C Stewart、 Seh W Bonahue、 Louise C Showe
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分析服务

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