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E-GEOD-38600 GSE38600, SRP013623 RNA-seq of non coding RNA Arabidopsis thaliana

Small RNAs in tgh-1 mutant

·Released Aug. 2, 2012 ·Updated March 11, 2013
4
Samples
4
Assays
1
References
Description

miRNAs are regulators of gene expression in plants and animals. Their biogenesis is precisely controlled to secure normal development of organisms. Here we report that TOUGH (TGH) is a novel component of DCL1-HYL1-SE complex that processes of primary transcripts of miRNAs (pri-miRNAs) into miRNAs in Arabidopsis. Lack of TGH impairs multiple DCL activities in vitro and reduces the accumulation of miRNAs and siRNAs in vivo. TGH is an RNA binding protein, binds with pri-miRNAs in vivo and contributes to pri-miRNA-HYL1interaction. These results indicate that TGH might regulate abundance of miRNAs through promoting the DCL1 cleavage efficiency and/or recruitment of pri-miRNAs. Because TGH is a conserved protein in plants and animals, our study shall have implications on miRNA pathway in other organisms tgh-1 mutant vs. wild type

Sample Attributes
genetic background
Col-0
genotype
tgh-1, wild type
Organism
Arabidopsis thaliana
organism part
flowers and flower buds
Experiment Info
Accession
E-GEOD-38600
GEO ID
GSE38600, SRP013623
Type
RNA-seq of non coding RNA
Organism
Arabidopsis thaliana
Released
Aug. 2, 2012
Updated
March 11, 2013
Submitter
Zhang Chi、 Bin Yu、 Ren Guodong、 Yu Bin
Analysis Services
Analysis Services

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