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E-GEOD-39278 GSE39278 transcription profiling by array Canis lupus familiaris

Gene Transcription Abnormalities in Canine Atopic Dermatitis

·Released July 11, 2012 ·Updated July 23, 2012
39
Samples
39
Assays
1
Array Platforms
1
References
Description

Canine atopic dermatitis (AD) is clinically similar to human AD, implicating it as a useful model of human eosinophilic allergic disease. To identify cutaneous gene transcription changes in relatively early inflammation of canine AD, microarrays were used to monitor transcription in normal skin (n=13) and in acute lesional AD (ALAD) and nearby visibly nonlesional AD (NLAD) skin (n=13) from dogs. Scanning the putative abnormally-transcribed genes, several potentially relevant genes, some abnormally transcribed in both NLAD and ALAD (e.g. IL6, NFAM1, MSRA, and SYK), were observed. Comparison for abnormally-transcribed genes common to two related human diseases, human AD and asthmatic chronic rhinosinusitis with nasal polyps (aCRSwNP), further identified genes or gene sets likely relevant to eosinophilic allergic inflammation. These included 1) genes associated with alternatively-activated monocyte-derived cells, including members of the monocyte chemotactic protein (MCP) gene cluster, 2) members of the IL1 family gene cluster, 3) eosinophil-associated seven transmembrane receptor EMR1 and EMR3 genes, 4) interferon-inducible genes, and 5) keratin genes associated with hair and nail formation. Overall, numerous abnormally-transcribed genes were observed only in canine AD; however, many others are common to related human eosinophilic allergic diseases and represent therapeutic targets testable in dogs with AD. Total RNA from skin biopsy specimens from 13 Healthy (i.e. Normal) dogs were compared to total RNA from acute lesional skin biopsy specimens (i.e. ALAD) and nearby visibly nonlesional skin biopsy specimens (i.e. NLAD) from 13 dogs with atopic dermatitis.

Array Platforms
A-AFFY-149
Affymetrix GeneChip Canine Genome 2.0 Array [Canine_2](39 items)
Sample Attributes
age (years)
1, 2, 3, 4, 5, 6, 7, 8, 9
biopsy site
axillary region, caudal aspect shoulder, caudal to the shoulder, commissure of the mouth, cranial aspect of shoulder, cranial aspect of the shoulder, cranial elbow, flank area, flank region, groin region, inner thigh, lateral chest, lumbar region, medial thigh, para-lumbar region, scapula
breed
American Staffordshire Terrier, Bichon Frise, English Setter, German Shepherd, Golden Retriever, Gordon Setter, Greyhound, Labrador mix, Labrador Retriever, Old English Sheepdog, Pug, Shih tzu, Soft Coat Wheat Terrier, West Highland White Terrier
disease severity
10 (p), 21, 23, 24, 30, 51, 63, 7 (p), 9 (p), Not applicable
medications
Cephalexin 750mg BID, Marbofloxacin 55mg SID, none, Simplicef 100mg SID; Hydroxyzine 25mg BID, Simplicef 50mg SID; antihistamine
Organism
Canis lupus familiaris
sex
female-spayed, male-intact, male-neutered
Experiment Info
Accession
E-GEOD-39278
GEO ID
GSE39278
Type
transcription profiling by array
Organism
Canis lupus familiaris
Released
July 11, 2012
Updated
July 23, 2012
Submitter
Douglas A Plager、 Douglas A Plager、 Sheila M Torres、 Hirohito Kita、 Sandra N Koch
Analysis Services
Analysis Services

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