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E-GEOD-39731 GSE39731 transcription profiling by array Danio rerio

Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish

·发布 2013年7月17日 ·更新 2014年6月2日
32
样本数
32
实验数
1
芯片平台
1
相关文献
实验描述

Rhabdomyosarcoma is a pediatric malignancy thought to arise from the uncontrolled proliferation of myogenic cells. Here, we have generated models of rhabdomyosarcoma in the zebrafish by inducing oncogenic KRASG12D expression at different stages during muscle development. Several zebrafish promoters were used including the cdh15 and rag2 promoters that drive gene expression in early muscle progenitors, and the mylz2 promoter that expresses in differentiating myoblasts. The tumors that developed differed in their ability to recapitulate normal myogenesis. cdh15:KRASG12D and rag2:KRASG12D fish developed tumors that displayed an inability to fully undergo muscle differentiation by histologic appearance and gene expression analyses. In contrast, mylz2:KRASG12D tumors more closely resembled mature skeletal muscle and were most similar to well-differentiated human rhabdomyosarcoma by gene expression. mylz2:KRASG12D fish showed significantly improved survival compared to cdh15:KRASG12D and rag2:KRASG12D fish. Tumor-propagating activity was enriched in myf5-expressing cell populations within all of the tumor types. Our results demonstrate that oncogene expression at different stages during muscle development has profound effects on the ability of tumor cells to recapitulate normal myogenesis, altering the tumorigenic capability of these cells. 32 samples total: 7 WT muscle, 9 mylz2-KRAS, 9 cdh15-KRAS, and 7 rag2-KRAS tumors

参考文献
芯片平台
A-AFFY-38
Affymetrix GeneChip Zebrafish Genome Array [Zebrafish](32 例)
样本属性
organism
Danio rerio
strain or line
AB
tissue type
muscle, rhabdomyosarcoma
transgene
cdh15:KRASG12D, mylz2:KRASG12D, rag2:KRASG12D, wild type
实验信息
登记号
E-GEOD-39731
GEO 编号
GSE39731
实验类型
transcription profiling by array
物种
Danio rerio
发布日期
2013年7月17日
更新日期
2014年6月2日
提交者
Richard White、 Leonard Zon、 Richard Mark White、 Narie Storer
分析服务
分析服务

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