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E-GEOD-39969 GSE39969, SRP014743 ChIP-seq Mus musculus

NFATc1 integrates STAT3 inflammatory signals to promote Kras(G12D)-driven carcinogenesis in the pancreas

·发布 2014年6月30日 ·更新 2014年7月24日
3
样本数
3
实验数
实验描述

Inflammatory transcription networks have been linked with the development of pancreatic ductal adenocarcinoma (PDAC). Here, we demonstrate that NFATc1 is both necessary and sufficient to drive progression of KrasG12D-initiated PDAC, particularly in the context of inflammation. Significantly, nuclear NFATc1 accelerates PDAC development in KrasG12D mice, whereas conditional NFATc1 deletion or pharmacological inhibition attenuates inflammation-mediated carcinogenesis. Mechanistically, NFATc1 induces STAT3 expression, complex formation and signal integration in PDAC. Genome-wide ChIP-sequencing and expression analysis in cells derived from c.n.NFATc1;KrasG12D mice identified combinatorial NFATc1/STAT3 binding at chromatin enhancer sites and subsequent regulation of key molecules involved in oncogenic signaling, growth and inflammation. Together, this study supports the relevance of inflammatory transcription factor networks in pancreatic carcinogenesis and provides a theoretical platform for therapeutic targeting of NFATc1 nucleoprotein complexes in PDAC. NFATc1 ChIP followed by high throughput sequencing in primary murine pancreatic cancer cells (referred to as NKC cells) derived from transgenic mice with pancreas-specific constitutive activation of NFATc1 and KrasG12D mutation in the presence or absence of STAT3 shRNA; 2 ChIP samples (scramble DNA and shSTAT3 DNA) and 1 unenriched input control from the same chromatin pool.

样本属性
cell type
NKC pancreatic cancer cells
chip antibody
NFATc1, None
chip antibody cat. #
None, SC-7294 ac
chip antibody lot #
None, K0904
chip antibody vendor
None, Abcam
organism
Mus musculus
stably transfected with
None, scramble vector, STAT3-specific shRNA
strain background
None, mixed (129S6 and C57BL/6)
实验信息
登记号
E-GEOD-39969
GEO 编号
GSE39969, SRP014743
实验类型
ChIP-seq
物种
Mus musculus
发布日期
2014年6月30日
更新日期
2014年7月24日
提交者
Volker Ellenrieder、 Marek Bartkuhn、 Marek Bartkuhn、 Elmar Wolf、 Sandra Baumgart
分析服务
分析服务

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