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E-GEOD-4457 GSE4457 unknown experiment type Homo sapiens

Microarray Analysis of Dupuytren's Disease Tissues

提交 2006年3月13日 ·发布 2006年3月14日 ·更新 2012年3月27日
22
样本数
11
实验数
2
芯片平台
1
相关文献
实验描述

PURPOSE: Dupuytren's disease (DD) is characterized by fibroblastic proliferation of the palmar fascia, often leading to flexion contracture in the hand. Although there is a strong genetic component the genome-wide expression of novel genes is not known. The purpose of this study was to use DNA microarray technology to identify upregulated genes in DD. METHODS: Human tissue samples were harvested from 3 patient sources: DD cord tissue (n = 20), normal-appearing adjacent control fascia (n = 15), and palmar fascia from patients having carpal tunnel release (n = 15). DNA microarray analysis was performed on amplified sample RNA. Novel genes were compared with known gene functions. A candidate gene of interest was studied further by using immunohistochemistry on DD tissue samples and controls. : Several novel genes not described previously in the study of DD were upregulated significantly, including MafB, collagen type V, alpha-2 (COL5A2), collagen type VIII, alpha-1 (COL8A1), contactin I (CNTN1), and leucine-rich repeat containing 17 (LRRC17). These upregulated genes were compared with their known gene-expression profiles in other tissues and their purported functions. MafB was found to be of particular interest because of its prominent role in tissue development and cellular differentiation. MafB immunohistochemistry showed positive staining in 50% of the DD specimens but complete absence of MafB in all control tissues (adjacent control fascia, carpal tunnel fascia). Co-localization experiments with MafB and alpha-smooth muscle actin showed staining properties in similar regions but these 2 proteins were not confined solely to the same cells. CONCLUSIONS: Microarray analysis of DD tissue has identified significant upregulated gene expression of MafB. MafB protein also is found in Dupuytren's cords but not in control fascia. Co-localization data suggest that the association of MafB with DD is not related exclusively to myofibroblast proliferation. Because of its role in fibroblastic transformation in other models MafB and its relationship to the pathogenesis of DD deserves further study. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed

参考文献
Expression of a novel gene, MafB, in Dupuytren's disease.
Lee LC, Zhang AY, Chong AK, Pham H, Longaker MT, Chang J
PMID: 16473681
芯片平台
A-GEOD-3340
SHDN(7 例)
A-GEOD-3544
SHFM(4 例)
样本属性
Organism
Homo sapiens
实验信息
登记号
E-GEOD-4457
GEO 编号
GSE4457
实验类型
unknown experiment type
物种
Homo sapiens
提交日期
2006年3月13日
发布日期
2006年3月14日
更新日期
2012年3月27日
提交者
Stanford Microarray Database、 Kenton Fong
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