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E-GEOD-46385 GSE46385 transcription profiling by array Homo sapiens

Clinical, Molecular and Genetic Validation of a Murine Orthotopic Xenograft Model of Pancreatic Adenocarcinoma using Fresh Human Specimens

·发布 2013年10月1日 ·更新 2014年6月3日
47
样本数
47
实验数
1
芯片平台
实验描述

This project describes the establishment and validation of a murine orthotopic xenograft model using fresh human tumor samples that recapitulates the critical components of human pancreatic adenocarcinoma. The authors discuss the proven and theoretical advantages of the model as well as future translational implications. Background: Relevant preclinical models that recapitulate the key features of human pancreatic ductal adenocarcinoma (PDAC) are needed in order to provide biologically tractable models to probe disease progression and therapeutic responses and ultimately improve patient outcomes for this disease. Here, we describe the establishment and clinical, pathological, molecular and genetic validation of a murine, orthotopic xenograft model of PDAC. Methods: Human PDACs were resected and orthotopically implanted and propagated in immunocompromised mice. Patient survival was correlated with xenograft growth and metastatic rate in mice. Human and mouse tumor pathology were compared. Tumors were analyzed for genetic mutations, gene expression, receptor tyrosine kinase (RTK) activation, and cytokine expression. Results: Fifteen human PDACs were propagated orthotopically in mice. Xenografts developed peritoneal and liver metastases. Time to growth and metastatic efficiency in mice each correlated with patient survival. Tumor architecture, nuclear grade and stromal content were similar in patient and xenografted tumors. Propagated tumors closely exhibited the genetic and molecular features known to characterize pancreatic cancer (e.g. high rate of KRAS, p53, SMAD4 mutation and EGFR activation). The correlation coefficient of gene expression between patient tumors and xenografts propagated through multiple generations was 93 to 99%. Analysis of gene expression demonstrated distinct differences between xenografts from fresh patient tumors versus commercially available PDAC cell lines. Conclusions: Our orthotopic xenograft model derived from fresh human PDACs closely recapitulates the clinical, pathologic, genetic and molecular aspects of human disease. This model has resulted in the identification of rational therapeutic strategies to be tested in clinical trials and will permit additional therapeutic approaches and identification of biomarkers of response to therapy. 47 Samples in total were generated for normal pancreatic tissue in patients, pancreatic tumors in patients, pancreatic tumors propagated in a mouse xenograft model, and pancreatic cancer cell lines in vitro. Clustering analysis was performed to evaluate the differences between patient tumors, xenograft tumors, established cancer cell lines, and cell lines derived from xenografts.

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](47 例)
样本属性
cell line
None, CBxPC-3, CL3.6p1, PANC-1, Panc96, UVA366, UVA608
generation in xenograft model
None, F1, F10, F11, F12, F2, F3, F5, F6, F8
host organism
Homo sapiens, in vitro, Mus musculus
malignancy
cancer, Non-cancer
organism
Homo sapiens
organism part
None, Patient pancreas tissue, Patient pancreatic tumor, Patient-derived tumor in mouse, Tumor mPanc96
patient/line
BxPC-3, L3.6p1, mPanc96, PANC-1, UVA1049, UVA190, UVA215, UVA232, UVA366, UVA431, UVA432, UVA450, UVA530, UVA580, UVA602, UVA608, UVA624, UVA653, UVA654, UVA67, UVA738, UVA912
tissue preserve method
Allprotect, cryopreservation, frozen, n/a, RNAlater
实验信息
登记号
E-GEOD-46385
GEO 编号
GSE46385
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2013年10月1日
更新日期
2014年6月3日
提交者
Edward B Stelow、 Wenjun Xin、 Todd W Bauer、 Cheryl A Borgman、 Sara J Adair、 Jae K Lee、 Dustin M Walters、 Bryce T Lowrey、 Jason A Papin、 Edik M Blais、 Jayme B Stokes、 J T Parsons、 Edik Matthew Blais
分析服务
分析服务

联系地址

山东省济南市章丘区文博路2号

齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号

大学科技园北区F座4单元2楼

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