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E-GEOD-47368 GSE47368 transcription profiling by RT-PCR Homo sapiens

The expression profile of SLC transporter genes in resectable pancreatic cancer

·发布 2013年6月30日 ·更新 2014年6月11日
59
样本数
59
实验数
1
芯片平台
1
相关文献
实验描述

Objectives: The aim of this study was to investigate the prognostic significance of thirteen anticancer drug-relevant solute carrier transporters (SLCs) in pancreatic cancer in the context of clinical-pathological characteristics and the KRAS mutation status of tumors. Methods: Tumors and non-neoplastic pancreatic tissues were obtained from 32 histologically verified patients with pancreatic ductal adenocarcinoma. The transcript profile of SLCs was assessed using quantitative real-time PCR. KRAS mutations in exon 2 were assessed by high resolution melting analysis and confirmed by sequencing. Results: SLC22A3 was upregulated and SLC22A1, SLC22A2, SLC22A11, SLC28A1, SLC28A3 and SLC29A1 were downregulated when compared with non-neoplastic pancreatic tissues. Moreover, significantly lower levels of SLC22A1, SLC22A11 and SLC29A1 were found in tumors with angioinvasion. There was also a significantly higher transcript level of SLC28A1 in tumors with regional lymph nodes affected by metastasis. The study found that a high expression of SLC22A1 or SLC28A1was significantly associated with poor overall survival in unselected patients. In contrast, a high expression of SLC22A3 or SLC29A3 was significantly associated with longer overall survival in patients treated with nucleoside analogs. Finally, SLC levels were not found to be associated with KRAS mutation status in exon 2. Conclusions: This study identified a number of associations of SLCs with prognosis of pancreatic cancer patients. Transcript levels of thirteen anticancer drug-relevant solute carrier transporters (SLCs) were determined by qPCR in pancreatic ductal adenocarcinomas and non-neoplastic tissue samples from 32 pancreatic cancer patients. MRPL19, ELF1 and POLR2A were used as reference genes for data normalization.

参考文献
The association between the expression of solute carrier transporters and the prognosis of pancreatic cancer.
Mohelnikova-Duchonova B, Brynychova V, Hlavac V, Kocik M, Oliverius M, Hlavsa J, Honsova E, Mazanec J, Kala Z, Melichar B, Soucek P
PMID: 23934321
芯片平台
A-GEOD-17202
Custom TaqMan pPCR: 13 solute carrier transporters (SLCs)(59 例)
样本属性
angioinvasion
--, pA0, pA1
chemotherapy
--, FUFA, FUFA + Gemcitabin, Gemcitabin, Gemcitabin + 5FU, none, Unknown
grade
--, G1, G2, G3, G4
nodes
--, pN0, pN1
organism
Homo sapiens
organism part
Paired non-neoplastic tissue, Tumor
os in days
--, 1008, 1032, 104, 1069, 1074, 1105, 1341, 146, 15, 22, 253, 266, 303, 311, 363, 397, 436, 437, 451, 46, 49, 500, 614, 62, 626, 665, 677, 692, 721, 752, 889, 993
perineural invasion
--, pP0, pP1
resection
--, pR0, pR1
sampleID
PCI02, PCI04, PCI05, PCI07, PCI08, PCI09, PCI10, PCI12, PCI15, PCI17, PCI20, PCI25, PCI26, PCI28, PCI29, PCI30, PCI37, PCI39, PCI41, PCI42, PCI44, PCI47, PCI49, PCI50, PCI51, PCI53, PCI54, PCI55, PCI56, PCI58, PCI60, PCI62, ZPI02, ZPI04, ZPI05, ZPI07, ZPI08, ZPI09, ZPI10, ZPI12, ZPI15, ZPI17, ZPI20, ZPI25, ZPI28, ZPI29, ZPI30, ZPI41, ZPI42, ZPI44, ZPI47, ZPI50, ZPI51, ZPI53, ZPI54, ZPI56, ZPI58, ZPI60, ZPI62
status
--, alive, dead
tumor size
--, pT1, pT2, pT3, pT4
实验信息
登记号
E-GEOD-47368
GEO 编号
GSE47368
实验类型
transcription profiling by RT-PCR
物种
Homo sapiens
发布日期
2013年6月30日
更新日期
2014年6月11日
提交者
Beatrice Mohelnikova-Duchonova、 Pavel Soucek、 Pavel Soucek、 Veronika Brynychova
分析服务
分析服务

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