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E-GEOD-47941 GSE47941 transcription profiling by array Sus scrofa

Adipose tissue nutrigenomic study in Iberian pigs with dietary intervention of oleic acid supplementation

·Released June 14, 2013 ·Updated June 3, 2014
15
Samples
15
Assays
1
Array Platforms
Description

We studied the influence of the oleic acid content of the diet on adipose tissue transcriptome. Iberian pigs were fed a standard (C) or a high oleic sunflower oil enriched (HO) diet. Transcriptome analyses were performed in adipose tissue samples (inner layer) obtained at slaughter (110 kg live weight) employing the Affymetrix porcine GeneChip. Normalized and filtered microarray expression data (background corrected and base-2 logarithmic-transformed) were analyzed through Bayesian inference using the GEAMM v.1.6 program. Statistically significant expression differences (FDR<0.10) between C and HO groups were observed for a total of ten probes corresponding to nine different known genes. Six genes were overexpressed in the HO group and three were overexpressed in the C group. Expression differences between groups ranged from 1.38 to 2.75-fold. The two most significantly DE genes were related with immune defense (TCRB and GPR183) and others were related with nutrient metabolism as glicerolipid metabolism (GK), phospholipid and sphingolipid metabolism (PPM1L), carbohydrate metabolism (FBP2) aminoacid metabolism and energy homeostasis (PRSS35 and CKB) and gene expression regulation and adipogenesis (RXRG). 15 Iberian castrated male pigs were adscribed to one of two experimental groups at 28 kg live weight (7 animals in Control group and 8 animals in High Oleic group). Nutritional treatment was maintained until sacrifice of the animals at 110 kg of live weight. At the sacrifice, backfat adipose tissue was sampled from each animal at the level of the last rib.

Array Platforms
A-AFFY-75
Affymetrix GeneChip Porcine Genome Array [Porcine](15 items)
Sample Attributes
breed
Iberian
live weight
104.5, 106.5, 107, 108.5, 109.5, 110, 111.5, 112, 112.5, 113, 115, 116, 117, 118, 133
organism
Sus scrofa
organism part
adipose
sex
castrated male
Experiment Info
Accession
E-GEOD-47941
GEO ID
GSE47941
Type
transcription profiling by array
Organism
Sus scrofa
Released
June 14, 2013
Updated
June 3, 2014
Submitter
Cristina Ovilo、 Cristina Ovilo
Analysis Services
Analysis Services

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