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E-GEOD-48411 GSE48411 transcription profiling by array Mus musculus

Reprogramming of mouse somatic cells into pluripotent stem cells using a combination of small molecules

·Released June 29, 2013 ·Updated July 9, 2013
8
Samples
8
Assays
2
Array Platforms
Description

Somatic cells can be reprogrammed to generate induced pluripotent stem cells (iPSCs) by overexpression of four transcription factors, Oct4, Klf4, Sox2, and c-Myc. Bmi1 is responsible for conversion of adult mouse astrocytes and fibroblasts into neural stem cell-like cells and conversion of fibroblasts into iPSCs under enforced expression of Oct4. Here, in the first step of generating iPSCs, stable intermediate cells were generated from mouse astrocytes by Bmi1 in the absence of other transcription factors. These cells [called induced epiblast stem cell (EpiSC)-like cells (iEpiSCLCs)] are similar to EpiSCs in terms of expression of specific markers, epigenetic state, and ability to differentiate into three germ layers. Treatment with MEK/ERK and GSK3 pathway inhibitors in the presence of leukemia inhibitory factor resulted in conversion of iEpiSCLCs into iPSCs that were similar to mouse embryonic stem cells (mESCs), suggesting that Bmi1 is sufficient to reprogram astrocytes to pluripotency. Next, Bmi1 function was replaced with Shh activators (oxysterol and purmorphamine), which demonstrated that specific combinations of small molecules alone can reprogram mouse fibroblasts into iPSCs. These iPSCs resembled mESCs in terms of global gene expression profile, epigenetic status, and developmental potential, demonstrating that combinations of small molecules can compensate for reprogramming factors and are sufficient to directly reprogram mouse somatic cells into iPSCs. 4 Affymetrix and 4 Agilent samples

Array Platforms
A-MEXP-724
Agilent Whole Mouse Genome Microarray 4x44K 014868 G4122F (annotation from 02.2007)(4 items)
A-AFFY-130
Affymetrix GeneChip Mouse Gene 1.0 ST Array [MoGene-1_0-st-v1](4 items)
Sample Attributes
cell type
Bmi1-transduced mouse embryonic astrocytes, combinations of oxysterol -treated MEFs treated with 2i/LIF, combinations of purmorphamine-treated MEFs treated with 2i/LIF, De-differentiated cells from Bmi1-transduced mouse embryonic astrocytes under NSC culture condition, mouse embryonic astrocytes, mouse embryonic fibroblast, mouse embryonic stem cell, mouse embryonic stem cells from 129/Ola mice
developmental stage
blastocyst, blastocysts, embryo
genetic background
None, 129/Ola
organism
Mus musculus
Experiment Info
Accession
E-GEOD-48411
GEO ID
GSE48411
Type
transcription profiling by array
Organism
Mus musculus
Released
June 29, 2013
Updated
July 9, 2013
Submitter
Seungkwon You、 Seungkwon You
Analysis Services
Analysis Services

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