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E-GEOD-54352 GSE54352 transcription profiling by array Mus musculus

Loss of Lkb1 and Pten Leads to Lung Squamous Cell Carcinoma with Elevated Pdl1 Expression: Stroma Cells

·发布 2014年1月24日 ·更新 2014年2月18日
6
样本数
6
实验数
1
芯片平台
实验描述

Lung squamous cell carcinoma (SCC) is a deadly disease for which current treatments are inadequate. We demonstrate that bi-allelic inactivation of Lkb1 and Pten in the mouse lung led to SCC that recapitulated the histology, gene expression and microenvironment found in human disease. Lkb1/Pten-null (LP) tumors expressed the squamous markers Krt5, p63 and Sox2, and transcriptionally resembled the basal subtype of human SCC. In contrast to mouse adenocarcinomas, the LP tumors contained immune populations enriched for tumor-associated neutrophils. Sca1+/Ngfr+ fractions were enriched for tumor propagating cells (TPCs) that could serially transplant the disease in orthotopic assays. TPCs in the LP model and Ngfr+ cells in human SCCs highly expressed Pdl1, suggesting a novel mechanism of immune escape for TPCs. We used microarrays to detail the gene expression profles among lung SCC tumor epitheial cell, lung ADC tumor epithelia cell and normal epithelial cells. Kras tumor stroma cells and LP tumor stroma cells were sorted by FACS, the cells were gated as EpCAM-/CD45+/CD31+

芯片平台
A-AFFY-130
Affymetrix GeneChip Mouse Gene 1.0 ST Array [MoGene-1_0-st-v1](6 例)
样本属性
cell type
stroma
developmental stage
adult
genotype
Kras G12D, Lkb1 -/- Pten-/-
organism
Mus musculus
organism part
lung
strain
mixed 129/FVB
实验信息
登记号
E-GEOD-54352
GEO 编号
GSE54352
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2014年1月24日
更新日期
2014年2月18日
提交者
Chunxiao Xu、 Chunxiao Xu、 Christine M Fillmore
分析服务
分析服务

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