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E-GEOD-59329 GSE59329 transcription profiling by array Rattus norvegicus

Inhaled Ozone (O3)-Induces Changes in Serum Metabolomic and Liver Transcriptomic Profiles in Rats

·Released Jan. 31, 2015 ·Updated Feb. 8, 2015
32
Samples
32
Assays
1
Array Platforms
Description

Long-term exposure to particulate air pollutants has been linked to increased incidence of Type 2 Diabetes (T2DM). Recently, we showed that the gaseous pollutant, O3, induced glucose intolerance, and increased serum leptin and epinephrine in Brown Norway rats. In this study, we hypothesized that O3 exposure will cause broad scale changes in metabolic homeostasis involving liver, muscle and adipose tissues, and that serum metabolomic and liver transcriptomic profiling will provide mechanistic insights into pollutant-induced metabolic alterations. In the first experiment, male Wistar Kyoto (WKY) rats were exposed to filtered air (FA) or O3 at 0.25, 0.50, or 1.00 ppm, 6h/day for two consecutive days to establish concentration-related effects on glucose tolerance and lung injury. In a second experiment, rats were exposed to FA or 1.0 ppm O3, 6h/day for either one day or two consecutive days and systemic metabolic responses were determined immediately after each exposure or after an 18h recovery period. In WKY rats, O3 increased serum fasting glucose and leptin on day 1. Glucose intolerance persisted through two days of exposure but reversed 18h post second exposure. O3 exposure increased circulating metabolites of glycolysis, long-chain free fatty acids, branched chain amino acids (BCAA) and cholesterol while 1,5- anhydroglucitol, bile acids and metabolites of TCA cycle were decreased, indicating impaired glycemic control, muscle proteolysis and adipose lipolysis. Liver gene expression profile after O3 exposure reflected a response to the serum metabolite changes, as evidenced by increased expression of genes for glycolysis, TCA cycle and gluconeogenesis, and decreased expression of genes involved in steroid and fat biosynthesis. In conclusion, short-term O3 exposure induced hormonal changes and global metabolic disorder reflective of changes in peripheral glucose, lipid, and amino acid metabolism, representative of a stress-response. It remains to be examined if these metabolic alterations contribute to insulin resistance upon chronic exposure. Rats were exposed to filtered air (FA) or Ozone at 1 ppm, 6h/day for two consecutive days to establish ozone-exposure related effects on transcriptomic profiles. Samples were taken at three time points: 1 day (1day0hrs) - at the end of the 6 hour exposure period, 2 days (2day0hrs) - at the end of the of the second day 6 hour exposure period) and 2 days 18 hours (2day18hrs) - 18 hours after the 6 hour exposure period on the second day. Total liver RNA was isolated from ~20 mg tissue with a commercially available RNeasy mini kit (Qiagen, Valencia, CA) using silica gel membrane purification. Liver RNA was resuspended in 30μl of RNAse- free water. RNAse inhibitor was added and RNA yield was determined spectrophotometrically on a NanoDrop 1000 (Thermo Scientific, Wilmington, DE). RNA integrity was assessed by the RNA 6000 LabChip® kit using a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA). We examined global gene expression changes using the Affymetrix platform (RG- 230 PM Array strip). Biotin-labeled cRNA was produced from total RNA using an Affymetrix “IVT-express labeling kit “(cat# 901229).

Array Platforms
A-GEOD-16985
[HT_Rat230_PM] Affymetrix HT RG-230 PM Array Plate(32 items)
Sample Attributes
age
10 week old
exposed to
filtered air (FA), Ozone at 1 ppm
exposure time
6h/day for 1day, 6h/day for 2day
harvest time point
18 hours after the 6 hour exposure period on the 2nd day, at the end of the 6 hour exposure period, at the end of the of the 2nd day 6 hour exposure period
organism
Rattus norvegicus
organism part
liver
sex
male
strain
Wistar Kyoto (WKY)
weight
250-300g
Experiment Info
Accession
E-GEOD-59329
GEO ID
GSE59329
Type
transcription profiling by array
Organism
Rattus norvegicus
Released
Jan. 31, 2015
Updated
Feb. 8, 2015
Submitter
Ed D Karoly、 Allen D Ledbetter、 Virginia L Bass、 Beena D Vallanat、 Andrew J Ghio、 Desinia B Miller、 William O Ward、 Wayne E Cascio、 Debora L Andrews、 Mette C Schladweiler、 Urmila P Kodavanti、 William Ward、 Jan C Jones
Analysis Services
Analysis Services

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