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E-GEOD-61728 GSE61728 transcription profiling by array Mus musculus

The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene

·发布 2015年9月24日 ·更新 2015年9月25日
28
样本数
14
实验数
1
芯片平台
实验描述

Systemic sclerosis (SSc) is a polygenic, autoimmune disorder of unknown etiology, characterized by the excessive accumulation of extracellular matrix (ECM) proteins, vascular alterations, and autoantibodies. The tight skin (Tsk)2/+ mouse model of SSc demonstrates signs similar to SSc including tight skin and excessive deposition of dermal ECM proteins. By linkage analysis, we mapped the Tsk2 gene mutation to less than 3 megabases on chromosome 1. We performed both RNA sequencing of skin transcripts and genome capture DNA sequencing of the region spanning this interval in Tsk2/+ and wild-type littermates. A missense point mutation in the procollagen III amino terminal propeptide segment (PIIINP) of Col3a1 was found to be the best candidate for Tsk2, so both in vivo and in vitro genetic complementation tests were used to prove that this Col3a1 mutation is the Tsk2 gene. All previously documented mutations in the human Col3a1 gene are associated with Ehlers-Danlos syndrome, a connective tissue disorder that leads to a defect in type III collagen synthesis. The Tsk2 point mutation is the first documented gain-of-function mutation associated with Col3a1, which leads instead to fibrosis. This discovery provides insight into the mechanism of skin fibrosis manifested by Tsk2/+ mice. For the transfection experiment, three Col3a1 knockout fibroblast transfected with WT Col3a1 samples and three Col3a1 knockout fibroblast transfected with Tsk2 Col3a1 samples were used. For the 4-week female, three WT mice and three Tsk2 total skin RNA were used.

芯片平台
A-MEXP-724
Agilent Whole Mouse Genome Microarray 4x44K 014868 G4122F (annotation from 02.2007)(14 例)
样本属性
cell type
fibroblast
genotype
Col3a1 knockout, Tsk2 mouse, WT mouse
organism
Mus musculus
organism part
skin
sample type
4-week old female Tsk2 mouse, 4-week old female WT mouse, Col3a1 knockout fibroblast transfected with Tsk2 Col3a1, Col3a1 knockout fibroblast transfected with WT Col3a1, UMR (universal mouse reference)
实验信息
登记号
E-GEOD-61728
GEO 编号
GSE61728
实验类型
transcription profiling by array
物种
Mus musculus
发布日期
2015年9月24日
更新日期
2015年9月25日
提交者
Chelsea Burgwin、 Kristen Long、 Zhenghui Li、 Michael Whitfield
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