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E-GEOD-62647 GSE62647, SRP049208 RNA-seq of coding RNA Mus musculus

The histone methyltransferase Setd8 represses Gata2 expression and regulates erythroid maturation

·发布 2015年4月24日 ·更新 2015年5月2日
4
样本数
4
实验数
实验描述

The chromatin modifying enzymes that drive the erythroid-specific transcription program are incompletely understood. Setd8 is the sole histone methyltransferase in mammals capable of generating mono-methylated histone H4 lysine 20 (H4K20me1) and is expressed at significantly higher levels in erythroid cells than any other cell- or tissue- type, suggesting that Setd8 has an erythroid-specific function. To test this hypothesis, stable knockdown of Setd8 was established in extensively self-renewing erythroblasts (ESREs), a well-characterized, non-transformed, model of erythroid maturation. Setd8 knockdown impaired erythroid maturation, characterized by a delay in hemoglobin accumulation, larger cell area, persistent kit expression, incomplete nuclear condensation, and lower rates of enucleation than control cells. Setd8 knockdown did not alter ESRE proliferation or viability, or result in accumulation of DNA damage. Global gene expression analyses following Setd8 knockdown suggests that in erythroid cells, Setd8 functions primarily as a repressor and demonstrated high levels of Gata2 expression. Setd8 occupies critical regulatory elements in the Gata2 locus, and knockdown of Setd8 resulted in loss of H4K20me1 and gain of H4 acetylation at the Gata2 1S promoter. Taken together, these results imply that Setd8 is an important regulator of erythroid maturation that works in part through repression of Gata2. RNA-seq was performed of Setd8 knockdown and control cells, both while the cells were proliferating, and after 6 hours of maturation.

样本属性
organism
Mus musculus
prolireating vs maturing
maturing cells, proliferating cells
transfection
non-targeting shRNA control, non-targeting shRNA control and placed in maturation media 6 hours before RNA collection, shRNA targeting Setd8, shRNA targeting Setd8 and placed in maturation media or 6 hours prior to RNA collection
实验信息
登记号
E-GEOD-62647
GEO 编号
GSE62647, SRP049208
实验类型
RNA-seq of coding RNA
物种
Mus musculus
发布日期
2015年4月24日
更新日期
2015年5月2日
提交者
Laurie Steiner、 Laurie A Steiner
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