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E-GEOD-63107 GSE63107 transcription profiling by array Homo sapiens

Ingenol mebutate induces profound inflammatory and wound healing responses in uninvolved and actinic keratosis skin

·Released March 31, 2016 ·Updated April 3, 2016
30
Samples
30
Assays
1
Array Platforms
Description

We studied the transcriptomic profile of actinic keratosis (AK) skin compared to matched samples from uninvolved skin (US) before and after treatment with ingenol mebutate gel. We found that AK has a distinct mRNA profile that separates it from uninvolved skin. In particular, numerous genes associated with epidermal development and keratinocyte differentiation, such as LCE3D, SPRR1A, PI3 and several genes in the keratin family were highly expressed in AK0 skin, but not in US0, in line with the hyperkeratosis characteristic for AK. Topical application of ingenol mebutate had a profound effect on the gene expression profile, and interestingly, many more genes were affected in US than in AK. Enrichment analysis revealed that the main responses to ingenol mebutate treatment of both US and AK were inflammatory response, response to wounding, and wound healing. 30 skin biopsies were analysed; 5 from each of 6 AK patients. Before initiation of treatment, baseline biopsies were taken from one AK lesion (AK0) and from uninvolved skin (US0). A third biopsy was taken after day 1 application of ingenol mebutate from one AK lesion (AK1). The fourth and fifth biopsies were obtained one day after the second topical application with ingenol mebutate from an AK lesion (AK2) and from uninvolved skin (US2), respectively.

Array Platforms
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](30 items)
Sample Attributes
diagnosis
actinic keratosis (AK)
organism
Homo sapiens
organism part
skin
Experiment Info
Accession
E-GEOD-63107
GEO ID
GSE63107
Type
transcription profiling by array
Organism
Homo sapiens
Released
March 31, 2016
Updated
April 3, 2016
Submitter
Thomas Litman、 John R Zibert、 Maria Høyer-Hansen
Analysis Services
Analysis Services

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