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E-GEOD-63302 SRP049817, GSE63302 ChIP-seq, RNA-seq of coding RNA Mus musculus

Histone Reader BRWD1 Targets and Restricts Recombination to the Igk Locus

·Released Aug. 24, 2015 ·Updated Aug. 29, 2015
12
Samples
12
Assays
1
References
Description

B lymphopoiesis requires that immunoglobulin genes be accessible to RAG1-RAG2 recombinase. However, the RAG proteins bind widely to open chromatin, which suggests that additional mechanisms must restrict RAG-mediated DNA cleavage. Here we show that developmental downregulation of interleukin 7 (IL-7)-receptor signaling in small pre-B cells induced expression of the bromodomain-family member BRWD1, which was recruited to a specific epigenetic landscape at Igk dictated by pre–BCR-dependent Erk activation. BRWD1 enhanced RAG recruitment, increased gene accessibility and positioned nucleosomes 5′ to each Jκ recombination signal sequence. BRWD1 thus targets recombination to Igk and places recombination within the context of signaling cascades that control B cell development. Our findings represent a paradigm in which,at any particular antigen-receptor locus, specialized mechanisms enforce lineage- and stage-specific recombination. ChIP-seq for 1 transcription factor and 2 histone modifications in flow purified mouse small pre-B cells. ATAC-seq and RNA-seq in WT and Brwd-Mut mouse flow purified small pre-B cells.

References
Histone reader BRWD1 targets and restricts recombination to the Igk locus.
Mandal M, Hamel KM, Maienschein-Cline M, Tanaka A, Teng G, Tuteja JH, Bunker JJ, Bahroos N, Eppig JJ, Schatz DG, Clark MR
PMID: 26301565
Sample Attributes
antibodies
anti-Brwd1, anti-H3K9Ac, anti-H3S10pK14Ac, none
antibody vendor/catalog/lot
E15, sc-83517; Lot J1508, Millipore 06-942; Lot 2279810, Millipore 07-081; Lot 2200929
genotype
Brwd1-Mut, wild-type
organism
Mus musculus
strain background
C57BL/6, C57BL/6-C3HeB/FeJ
Experiment Info
Accession
E-GEOD-63302
GEO ID
SRP049817, GSE63302
Type
ChIP-seq, RNA-seq of coding RNA
Organism
Mus musculus
Released
Aug. 24, 2015
Updated
Aug. 29, 2015
Submitter
Azusa Tanaka、 David G Schatz、 Marcus Clark、 Keith M Hamel、 Neil Bahroos、 Mark Maienschein-Cline、 Jeffrey J Bunker、 Grace Teng、 Jigyasa H Tuteja、 John J Eppig、 Malay Mandal
Analysis Services
Analysis Services

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