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E-GEOD-70135 GSE70135, SRP059754 RNA-seq of coding RNA Mus musculus

Signaling through MyD88 in bone marrow-derived cells promotes gastric tumorigenesis by inducing the TLR2/CD14 pathway in tumor cells

·Released Dec. 15, 2015 ·Updated Dec. 19, 2015
15
Samples
15
Assays
Description

Gan mice express Wnt1, Ptgs2, and Ptges, which develop inflammation-associated gastric tumors (Oshima et al, Gastroenterology 131: 1086, 2006). We examined the role of MyD88 in tumorigenesis by construction of Myd88-/- Gan mice and bone marrow transplantation into Gan mice from Myd88-/- mice. Total RNA was prepared from wild-type normal glandular stomach (n=3: WT 1–WT 3), B6 C2mE mice (n=3: C2mE 1–C2mE 3), B6 Gan mice (n=3: Gan1–Gan3), B6 Gan MyD88-/- mice (n=3: Gan 1 (MyD88-/-)–Gan 3 (MyD88-/-)), and B6 bone marrow transplanted Gan mice from Myd88-/- mice (n=3: BMT-Gan 1 (from MyD88-/-)–BMT-Gan 3 (from MyD88-/-)). We used Illumina HiSeq 2000, and examined expression profiles.

Sample Attributes
age
40-50 weeks
genotype
K19-Ptgs2/K19-Ptges transgenic, K19-Wnt1/K19-Ptgs2/K19-Ptges transgenic, K19-Wnt1/K19-Ptgs2/K19-Ptges transgenic, bone marrow-transplanted from Myd88-/-, K19-Wnt1/K19-Ptgs2/K19-Ptges transgenic, Myd88 -/-, wild type
organism
Mus musculus
organism part
stomach
strain
C57BL/6
Experiment Info
Accession
E-GEOD-70135
GEO ID
GSE70135, SRP059754
Type
RNA-seq of coding RNA
Organism
Mus musculus
Released
Dec. 15, 2015
Updated
Dec. 19, 2015
Submitter
Masanobu Oshima、 Kanae Echizen、 masanobu oshima、 Yoichi Yamada、 Yusuke Maeda
Analysis Services
Analysis Services

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