主页 实验库实验详情
E-GEOD-73372 SRP064134, GSE73372 ChIP-seq, RNA-seq of coding RNA Mus musculus

AP-1 family members act at DNA targets in conjunction with Sox9 to promote chondrocyte hypertrophy

·发布 2016年2月29日 ·更新 2016年3月6日
6
样本数
6
实验数
实验描述

A comprehensive analysis of Sox9 binding profiles in developing chondrocytes identified marked enrichment of an AP-1-like motif (Ohba et al. 2015). Here, we have explored the functional interplay between Sox9 and AP-1 in mammalian chondrocyte development. Among AP-1 family members, Jun and Fosl2 were highly expressed within prehypertrophic and early hypertrophic chondrocytes. Chromatin immunoprecipitation followed by DNA sequencing (ChIP-seq) showed a striking overlap in Jun- and Sox9-bound regions throughout the chondrocyte genome, a reflection of direct binding of each factor to target motifs in shared enhancers, and physical interactions of AP-1 with Sox9. In vitro expression analysis indicates that direct co-binding of Sox9 and AP-1 at target motifs enhanced target gene expression, while protein-protein interactions suppressed AP-1- and Sox9-driven transcription. Analysis of prehypertrophic chondrocyte removal of Sox9 demonstrated Sox9 was essential for hypertrophic chondrocyte development, while in vitro and ex vivo analyses showed AP-1 promotes chondrocyte hypertrophy. Sox9 and Jun co-bound and co-activated a Col10a1 enhancer in Sox9 and AP-1 motif-dependent manners consistent with their combined action promoting hypertrophic gene expression. Together, the data support a model where AP-1-family members promote Sox9-action in the transition of chondrocytes to a terminal hypertrophic program. Intersection of ChIP-seq data from Sox9 and AP-1 factor Jun, RNA-seq data from developing rib chondrocytes and Col10a1mCherry positive hypertrophic chondrocytes in neonatal mice to uncover regulation of Sox9 by AP-1 factors during chondrocyte hypertrophy.

样本属性
cell type
chondrocytes
chip antibody
Jun(Abcam Cat#ab31419), none (input)
developmental stage
p1, Postnatal day 1, Postnatal day 3, Prenatal E18.5
genotype
Col10a1mCherry
mouse strain
Swiss Webster
organism
Mus musculus
organism part
rib
strain
ICR mice
实验信息
登记号
E-GEOD-73372
GEO 编号
SRP064134, GSE73372
实验类型
ChIP-seq, RNA-seq of coding RNA
物种
Mus musculus
发布日期
2016年2月29日
更新日期
2016年3月6日
提交者
Andrew P McMahon、 Shinsuke Ohba、 Hironori Hojo、 Xinjun He
分析服务
分析服务

联系地址

山东省济南市章丘区文博路2号

齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号

大学科技园北区F座4单元2楼

电话: 0531-88819269

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。


商务邮箱

E-mail: [email protected]