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E-GEOD-78959 SRP071232, GSE78959 RNA-seq of coding RNA Homo sapiens

Modeling the Neuropathology of Tuberous Sclerosis with Human Stem Cells Reveals a Role for Inflammation and Angiogenic Growth Factors [Cell Model]

·Released July 25, 2016 ·Updated July 30, 2016
24
Samples
24
Assays
Description

Tuberous sclerosis complex (TSC) is a rare genetic disease characterized by mTOR hyperfunction induced benign tumor growths in multiple organs and neurological symptoms. Because the molecular pathology is highly complex and the etiology poorly understood we employed a defined human neuronal model with a single mTOR activating mutation to dissect the disease-relevant molecular responses driving the neuropathology. TSC2 deficient neural stem cells showed severely reduced neuronal functional maturation and characteristics of astrogliosis instead. Accordingly, transcriptome analysis uncovered an inflammatory response and increased metabolic activity, while ribosome profiling revealed excessive translation of ribosomal transcripts and higher synthesis rates of angiogenic growth factors. Treatment with mTOR inhibitors corrected translational alterations but not transcriptional dysfunction. These results extend our understanding of the molecular pathophysiology of TSC brain lesions, and suggest phenotype-tailored pharmacological treatment strategies. Two TSC+/- cell lines and two TSC-/- cell lines were independently generated from wild-type human embryonic stem cells by genome editting with zinc finger nucleases. Two cell lines were handled in the same way but without any known human gene editted and they are used as negative controls. Two independent biological replicates of each of the six cell lines are profiled with ribosome profiling technique.

Sample Attributes
assayed molecule
mRNA, Ribosome protected fragments
cell type
Embryonic stem cell-derived neurons
genotype
TSC2+/+, TSC2+/-, TSC2-/-
organism
Homo sapiens
parental cell line id
hESC.2, hESC.3
Experiment Info
Accession
E-GEOD-78959
GEO ID
SRP071232, GSE78959
Type
RNA-seq of coding RNA
Organism
Homo sapiens
Released
July 25, 2016
Updated
July 30, 2016
Submitter
Nadine Ruderisch、 Stefan Aigner、 Michel Theron、 Jitao David Zhang、 Martin Ebeling、 Felix C Weber、 Jitao D Zhang、 Gene W Yeo、 Anna Kiialainen、 Nikolaos Berntenis、 Olivia Spleiss、 Ravi Jagasia、 Veronica Costa、 Nils Grabole
Analysis Services
Analysis Services

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