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E-GEOD-78960 GSE78960, SRP071235 RNA-seq of coding RNA Homo sapiens

Modeling the Neuropathology of Tuberous Sclerosis with Human Stem Cells Reveals a Role for Inflammation and Angiogenic Growth Factors [Treatment]

·Released July 25, 2016 ·Updated July 30, 2016
48
Samples
48
Assays
Description

Tuberous sclerosis complex (TSC) is a rare genetic disease characterized by mTOR hyperfunction induced benign tumor growths in multiple organs and neurological symptoms. Because the molecular pathology is highly complex and the etiology poorly understood we employed a defined human neuronal model with a single mTOR activating mutation to dissect the disease-relevant molecular responses driving the neuropathology. TSC2 deficient neural stem cells showed severely reduced neuronal functional maturation and characteristics of astrogliosis instead. Accordingly, transcriptome analysis uncovered an inflammatory response and increased metabolic activity, while ribosome profiling revealed excessive translation of ribosomal transcripts and higher synthesis rates of angiogenic growth factors. Treatment with mTOR inhibitors corrected translational alterations but not transcriptional dysfunction. These results extend our understanding of the molecular pathophysiology of TSC brain lesions, and suggest phenotype-tailored pharmacological treatment strategies. Rapamycin, AZD-8055, and DMSO were given to two TSC+/+ cell lines and two TSC-/- cell lines after six weeks of differentiation. Cells are harvested after 3 hours treatment and are subject to ribosome profiling and RNA-seq analysis.

Sample Attributes
assayed molecule
mRNA, Ribosome protected fragments
cell line id
15, 16, 19, 20
cell type
Embryonic stem cell-derived neurons
genotype
TSC2+/+, TSC2-/-
organism
Homo sapiens
Experiment Info
Accession
E-GEOD-78960
GEO ID
GSE78960, SRP071235
Type
RNA-seq of coding RNA
Organism
Homo sapiens
Released
July 25, 2016
Updated
July 30, 2016
Submitter
Olivia Spleiss、 Veronica Costa、 Ravi Jagasia、 Nadine Ruderisch、 Felix C Weber、 Gene W Yeo、 Michel Theron、 Jitao David Zhang、 Anna Kiialainen、 Martin Ebeling、 Jitao D Zhang、 Stefan Aigner、 Nils Grabole、 Nikolaos Berntenis
Analysis Services
Analysis Services

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