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E-GEOD-8668 GSE8668 transcription profiling by array Homo sapiens

Transcription profiling by array of human neutrophils after 30 minutes' exercise

·发布 2008年6月16日 ·更新 2015年7月28日
24
样本数
24
实验数
1
芯片平台
1
相关文献
实验描述

Relatively brief bouts of exercise alter gene expression in peripheral blood mononuclear cells (PBMCs), but whether or not exercise changes gene expression in circulating neutrophils (whose numbers, like PBMCs, increase) is not known. We hypothesized that exercise would activate neutrophil genes involved in apoptosis, inflammation, and cell growth and repair, since these functions in leukocytes are known to be influenced by exercise. Blood was sampled before and immediately after 30-min of constant, heavy (about 80% peak O2 uptake) cycle-ergometer exercise in 12 healthy men (19-29 yr old) of average fitness. Neutrophils were isolated using density gradients; RNA was hybridized to Affymetrix U133+2 Genechip arrays. Using FDR<0.05 with 95% confidence a total of 526 genes were differentially expressed between before and after exercise. 316 genes had higher expression after exercise. The Jak/STAT pathway, known to inhibit apoptosis, was significantly activated (EASE score, p<0.005), but 14 genes were altered in a way likely to accelerate apoptosis as well. Similarly, both proinflammatory (e.g., IL32, TNFSF8 and CCR5) and anti-inflammatory (e.g., ANXA1) were affected. Growth and repair genes like AREG and FGF2 receptor genes (involved in angiogenesis) were also activated. Finally, a number of neutrophil genes known to be involved in pathological conditions like asthma and arthritis were altered by exercise, suggesting novel links between physical activity and disease or its prevention. In summary, brief heavy exercise leads to a previously unknown substantial and significant alteration in neutrophil gene expression. Experiment Overall Design: Twelve healthy men (19-29 yr old) participated in this study. A baseline blood sample was taken before the onset of exercise and immediately after 30-min exercise bout. Neutrophils were isolated using OptiPrep Density Gradient Medium (SIGMA). Total RNA was extracted using TRIzol. cRNA was hybridized onto Affymetrix U133+2 arrays (total of 24 chips).

参考文献
Effects of 30 min of aerobic exercise on gene expression in human neutrophils.
Radom-Aizik S, Zaldivar F Jr, Leu SY, Galassetti P, Cooper DM.
PMID: 18006867
芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](24 例)
样本属性
age
19 year, 20 year, 22 year, 23 year, 24 year, 26 year, 27 year, 29 year
cell type
neutrophil
disease
normal
individual
P01, P02, P03, P04, P05, P06, P07, P08, P09, P10, P11, P12
organism
Homo sapiens
organism part
peripheral blood
sex
male
实验信息
登记号
E-GEOD-8668
GEO 编号
GSE8668
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2008年6月16日
更新日期
2015年7月28日
提交者
Shlomit Radom-Aizik
分析服务
分析服务

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