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E-GEOD-9188 GSE9188 transcription profiling by array Mus musculus

Transcription profiling of mouse long term HSC from control or Pbx1-null mice

Submitted Sept. 27, 2007 ·Released June 20, 2008 ·Updated March 27, 2012
5
Samples
5
Assays
1
Array Platforms
1
References
Description

Self-renewal is a defining characteristic of stem cells, however the molecular pathways underlying its regulation are poorly understood. Here we demonstrate that conditional inactivation of the Pbx1 proto-oncogene in the hematopoietic compartment results in a progressive loss of long-term hematopoietic stem cells (LT-HSCs) that is associated with concomitant reduction in their quiescence, leading to a defect in the maintenance of self-renewal as assessed by serial transplantation. Transcriptional profiling revealed that multiple stem cell maintenance factors are perturbed in Pbx1-deficient LT-HSCs, which prematurely express a large subset of genes, including cell cycle regulators, normally expressed in non-self-renewing multipotent progenitors. A significant proportion of Pbx1-dependent genes are associated with the Tgf-b pathway, which serves a major role in maintaining HSC quiescence. Pbx1-deficient LT-HSCs are unable to up-regulate the cyclin dependent kinase inhibitor p57 in response to Tgf-b, providing a mechanism through which Pbx1 maintenance of stem cell self-renewal is achieved. Experiment Overall Design: Highly efficient Pbx1 deletion was induced with poly(I:C) in 3 young MxCre+.Pbx1f/f mutant or 2 MxCre-.Pbx1f/f control mice. LT-HSC (Lin-cKit+Sca1+CD34-CD135-) cells were prospectively sorted from bone marrow of individual mice harvested 4 weeks after the last injection of poly(I:C).

Array Platforms
A-AFFY-45
Affymetrix GeneChip Mouse Genome 430 2.0 [Mouse430_2](5 items)
Sample Attributes
Organism
Mus musculus
Experiment Info
Accession
E-GEOD-9188
GEO ID
GSE9188
Type
transcription profiling by array
Organism
Mus musculus
Submitted
Sept. 27, 2007
Released
June 20, 2008
Updated
March 27, 2012
Submitter
Francesca Ficara
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