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E-MTAB-13676 RNA-seq of coding RNA Homo sapiens, Homo sapiens

Bulk RNA-seq of monocytes and in vitro cultured monocyte-derived macrophages of ANCA-associated vasculitis patients with active and stable disease and healthy controls

·Released June 20, 2024
48
Samples
48
Assays
Description

To study monocyte and macrophage activation in ANCA-associtated vasculitis (AAV), we performed bulk RNA sequencing of bead-selected monocytes and in vitro cultured monocyte-derived macrophages from AAV patients and healthy controls. Overview patients included for sequencing monocytes: - AAV active disease, n=4, MPO-AAV=4 - AAV remission, n=10, PR3-AAV=5, MPO-AAV=5 - Healthy controls, n=6 Overview patients included for sequencing monocyte-derived macrophages: - AAV active, n=1, PR3-AAV=1 - AAV remission, n=3, PR3-AAV=3 - Healthy controls, n=3

Sample Attributes
Organism
Homo sapiens
Organism part
blood
Developmental stage
adult
Individual
110046, 110044, 110048, 110033, 110043, 110066, 120001, 110072, 110073, 110026, 110036, 110050, 110028, 110016, 110051, ... 6 other values
Age
63 year, 27 year, 76 year, 40 year, 53 year, 73 year, 78 year, 41 year, 72 year, 85 year, 67 year, 64 year, 58 year, 54 year, 55 year, ... 5 other values
Sex
male, female
Cell type
Monocyte-derived-macrophage, CD14+ Monocyte
Disease
ANCA_remission, normal, ANCA_active
Stimulus
M1, Mono, MIL_10, MIL_4, M0
Anca subtype
MPO, PR3, NA
Clinical subtype
GPA, MPA, NA, Renal limited, Unknown
Crp level blood
0.3, 0.6, 4.9, -99, 9.3, 6.7, 1.1, 5.2, 24.3, 25, 0.8, 7, 6.9, 5, 12.1, ... 3 other values
Monocyte number blood
0.4, 0.5, 0.39, 0.54, 0.6, 0.87, 0.61, 0.51, 0.2, 0.86, 0.78, 0.47, 0.72, 0.35, 0.9, ... 2 other values
Egfr
44, 6, 75, 71, 59, 90, 55, 32, 68, 41, 63, 5, 30, 49, 16
Serum creatinine
141, 733, 137, 167, 151, 54, 779, 93, 128, 92, 52, 279, 74, 150, 107, ... 5 other values
Immunosupression
RTX, AZA + 7.5 mg prednison, AZA + 5mg prednison, MPNS 1000mg + RTX, Prednison 5mg, RTX + 20mg prednison, x, MPNS 1000mg, Cyclo + RTX + MPNS (3x 1000mg), RTX + 5mg prednison
Prednison therapy
Yes, No
Experiment Info
Accession
E-MTAB-13676
Type
RNA-seq of coding RNA
Organism
Homo sapiens, Homo sapiens
Released
June 20, 2024
Submitter
Yosta Vegting、 Marc Hilhorst
External Links
ArrayExpress source
Analysis Services
Analysis Services

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