Processed RNA-seq of 95 lung adenocarcinoma samples

·发布 2026年2月8日

样本数

实验数

相关文献

实验描述

The AllPrep DNA/RNA mini kit (Qiagen) was used for RNA extraction following manufacturer’s instructions. Libraries were prepared using the Illumina TruSeq stranded mRNA protocol and sequenced on the NovaSeq 6000 system at the Center for Translational Genomics (www.ctg.lu.se) in Lund, Sweden. Demultiplexing was performed using the bcl2fastq2 software v2.18.0.12 (Illumina) with default settings and the quality was checked with FastQC v0.11.3. Reads were mapped to the GRCh38 reference genome using the HISAT2 software v2.1.0 and annotation files from release 103. Finally, RNA-sequencing (RNA-seq) expression data in FPKM were calculated with StringTie v1.3.4d.

参考文献

Multiomics assessment of lung adenocarcinoma subtypes defined through tumor purity-adjusted DNA methylation

Deborah F. Nacer, Elsa Arbajian, Srinivas Veerla, Mattias Aine, Mats Jönsson, Frida Rosengren, Anna Karlsson, Annette Salomonsson, Sofi Isaksson, Maria Planck, Johan Staaf

样本属性

Organism

Homo sapiens

Developmental stage

adult

Disease

lung adenocarcinoma

Organism part

lung

Age

78.9 year, 66 year, 53 year, 75.6 year, 66.7 year, 80 year, 71 year, 76 year, 69 year, 78 year, 54.7 year, 73 year, 70 year, 61 year, 71.7 year, ... 42 other values

Sex

female, male

Individual

LU968, LU1096, LU277, ... 92 other values

实验信息

登记号

E-MTAB-16082

实验类型

RNA-seq of coding RNA

物种

Homo sapiens, Homo sapiens

发布日期

2026年2月8日

提交者

Deborah F. Nacer、 Johan Staaf

外部链接

ArrayExpress 原始页

分析服务

Processed RNA-seq of 95 lung adenocarcinoma samples

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