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E-MTAB-7127 ChIP-seq Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Sus scrofa, Canis lupus familiaris, Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Canis familiaris, Sus scrofa, Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Sus scrofa, Canis lupus familiaris

H3K4me3, H3K27ac and H3K4me1 ChIP-seq in 4 tissues of 10 mammals

·Released Sept. 30, 2020

522

Samples

522

Assays

Description

To study the tissue-specific evolution of regulatory elements in the mammalian lineage, we created a comprehensive map of promoters and enhancers in 4 tissues of 10 mammalian species. To map in-vivo promoters and enhancers, we performed ChIP-seq experiments for H3K4me3, H3K27ac and H3K4me1 in adult liver, muscle, brain and testis of all 10 species. The species included in the study are: macaque, marmoset, mouse, rat, rabbit, pig, dog, cat, horse and opossum. To correlate regulatory evolution to expression, we also performed RNA-seq experiments in all tissues and species submitted separately to ArrayExpress.

Sample Attributes

Developmental stage

adult

Organism

Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Sus scrofa, Canis lupus familiaris

Strain

Beagle, Welsh Mountain Pony, not available, C57BL/6, Brown Norway

Individual

Opo23, 17_3506, Rat11, 17_3504, Horse4, Marmo13, Dog7, 17_3513, Dog6, Cat5, 6833, Dean, Dog5, Opo17, Marmo11, ... 43 other values

Age

14 week, 21 year, 5 month, 10 week, 1 year, 18.5 year, 2.5 year, not available, 1.5 year, 9 year, 5 year, 16 year, 9.5 year, 9 week, 6 month, ... 2 other values

Sex

female, male

Organism part

testis, muscle tissue, liver, brain

Replicate

3, 2, 1, 2b, 3b, 1b, 4, 3a, 1a, 2a

Experiment Info

Accession

E-MTAB-7127

Type

ChIP-seq

Organism

Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Sus scrofa, Canis lupus familiaris, Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Canis familiaris, Sus scrofa, Monodelphis domestica, Mus musculus, Rattus norvegicus, Oryctolagus cuniculus, Felis catus, Equus caballus, Macaca mulatta, Callithrix jacchus, Sus scrofa, Canis lupus familiaris

Released

Sept. 30, 2020

Submitter

Maša Roller、 Ericca Stamper

External Links

ArrayExpress source

Analysis Services

H3K4me3, H3K27ac and H3K4me1 ChIP-seq in 4 tissues of 10 mammals

Contact

WeChat Official Account