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E-MTAB-7165 High-throughput sequencing, RNA-seq of … Homo sapiens, Homo sapiens

Stable overexpression and knockdown of mutant- or wild type SPOP in VCaP prostate cancer cells

·Released Dec. 5, 2020
17
Samples
17
Assays
Description

Purpose: Little is known about the interplay of driver mutations that never co-occur within the same cancer cells. The latter scenario has been identified in prostate cancer where recurrent gene fusions involving the oncogenic ERG transcription factor and point mutations in the ubiquitin ligase adaptor SPOP are strictly mutually exclusive. We show that ERG and mutant SPOP – even though oncogenic on their own – are together synthetic sick. Description: RNA-Seq of lentiviral-transduced VCaP cells with stable knockdown of wild type SPOP (2 x hairpins) or stable overexpression of either wild-type or mutant SPOP (Y87C, F102C, W131G).

Sample Attributes
Organism
Homo sapiens
Cell line
VCaP
Developmental stage
adult
Disease
prostate carcinoma
Metastatic site
vertebra
Organism part
prostate gland
Genotype
empty overexpression vector, empty knockdown vector, overexpression of SPOP F102C mutant, wild type genotype, overexpression of SPOP Y87C mutant, SPOP knockdown by shRNA, overexpression of SPOP W131G mutant
Replicate
1, 3, 2
Experiment Info
Accession
E-MTAB-7165
Type
High-throughput sequencing, RNA-seq of coding RNA
Organism
Homo sapiens, Homo sapiens
Released
Dec. 5, 2020
Submitter
Marco Bolis
External Links
ArrayExpress source
Analysis Services
Analysis Services

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