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E-MTAB-7173 High-throughput sequencing, RNA-seq of … Homo sapiens, Homo sapiens

Stable over expression of the SPOP-substrate ZMYND11 in VCaP cells

·Released Dec. 16, 2020
6
Samples
6
Assays
Description

SPOP is known to bind to serine/theronine-rich degrons on substrate proteins. We identified two degron sequences within the PWWP and MYND domain of ZMYND11, a novel SPOP substrate, and investigated whether ZMYND11 may contribute to the transcriptional output of mutant SPOP in VCaP cancer cells. Hence, we performed over-expression of degron-deficient ZMYND11 and degron-deficient ZMYND11 with W294A mutation in VCaP cells. While WT ZMYND11 constructs can be robustly over-expressed at the mRNA level, only the degron-deficient variants yielded a robost increase in ZMYND11 protein expression. Degron mutant-induced transcriptional perturbations partially mimicked SPOP mutant-induced gene expression changes, suggesting that ZMYND11 is sufficient to recapitulate certain features of mutant SPOP.

Sample Attributes
Organism
Homo sapiens
Developmental stage
adult
Organism part
prostate gland
Metastatic site
vertebrae
Cell line
VCaP
Disease
prostate carcinoma
Genetic modification
CTRL, ZMYND11_WT, ZMYND11_DM, ZMYND11-W294A
Experiment Info
Accession
E-MTAB-7173
Type
High-throughput sequencing, RNA-seq of coding RNA
Organism
Homo sapiens, Homo sapiens
Released
Dec. 16, 2020
Submitter
MARCO BOLIS
External Links
ArrayExpress source
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