实验描述
We performed calibrated total RNAseq on mESC (Scc1-AID) for both untreated and treated cells with a 6-hour auxin exposure to assess the effects of cohesin removal on gene expression. For calibration purposes 2x10ˆ6 Drosophila SG4 cells were spiked in.
参考文献
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
James D.P. Rhodes, Angelika Feldmann, Benjam�n Hern�ndez-Rodr�guez, Noelia D�az, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinic, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, Kim A. Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
样本属性
auxin treatment
Auxin treatment for 6 hours, Nocodazole treatment, Untreated
cell type
mouse embryonic stem cell
date of experiment
05.11.2018, 06.11.2018, 10.07.2019
developmental stage
embryo
genotype
Scc1 -mAID-GFP/-mAID-GFP; Rosa26::Tir1
spike in cell line
SG4 Drosophila melanogaster cells