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E-MTAB-8556 Animal - High-throughput sequencing, mi… Felis catus, Felis catus

miRNA seq of kidney tissues from amyloidosis affected and healthy Abyssinian cats

·Released Dec. 31, 2020
6
Samples
6
Assays
Description

Five kidney sections of 10 μm of thickness were sliced from each FFPE block of three amyloidosis affected and three healthy cats. The total miRNAome was isolated using the miRNeasy FFPE kit by Qiagen. A total amount of 200ng of extracted miRNA/sample was sequenced using the smallRNA-seq kit by Illumina and the Illumina NextSeq500 platform. The read length obtained was 1x75bp for a total of 30 million reads. The quality control of the reads was assessed with FastQC and the adapter sequences were removed using Cutadapt.

Sample Attributes
Organism
Felis catus
Breed
Abyssinian
Developmental stage
adult
Organism part
kidney
Disease
normal, amyloidosis
Individual
Sample A1 PN 1/08 A, Sample A2 PN 160/09, Sample A3 PN 233/02, ... 3 other values
Experiment Info
Accession
E-MTAB-8556
Type
Animal - High-throughput sequencing, microRNA profiling by high throughput sequencing
Organism
Felis catus, Felis catus
Released
Dec. 31, 2020
Submitter
Maria Longeri
External Links
ArrayExpress source
Analysis Services
Analysis Services

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