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E-MTAB-8949 RNA-seq of coding RNA, Plant - High-t... Arabidopsis thaliana, Arabidopsis thaliana

Identity of root peridermis cells undergoing suberization in Arabidopsis

·发布 2020年12月14日
6
样本数
6
实验数
实验描述

In order to unravel the molecular processes involved in the nature of the root peridermis tissue, as well as in the suberin biosynthesis pathways occurring in this tissue, we have made use of Translating Ribosome Affinity Purification (TRAP) followed by RNA sequencing (TRAP-SEQ) on two marker lines; pUBQ10::BLRP-FLAG-GFP-RPL18 and pGPAT5::BLRP-FLAG-GFP-RPL18 line, after dissection of a zone of the root comprised between the root-hypocotyl junction and the first lateral root, allowing the respective selection of RNAs originating from all cells of the root segment, or only from those peridermis cells expressing the GPAT5 marker and therefore undergoing suberization.

样本属性
Organism
Arabidopsis thaliana
Cultivar
Col-0
Age
8
Organism part
root
Genetic modification
pUBQ10::BLRP-FLAG-GFP-RPL18, pGPAT5::BLRP-FLAG-GFP-RPL18
Cell type
all cells of the root segment, peridermis cells
实验信息
登记号
E-MTAB-8949
实验类型
RNA-seq of coding RNA, Plant - High-throughput sequencing
物种
Arabidopsis thaliana, Arabidopsis thaliana
发布日期
2020年12月14日
提交者
Plant Systems Biology data submission、 Tom Beeckman、 Maria Margarida Oliveira、 Boris Parizot、 Ana Rita MENDES LEAL
分析服务
分析服务

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